BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1522.p
         (198 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310976|ref|YP_003775068.1| NAD(P)H-dependent FMN reductase...   358   e-100
gi|300310283|ref|YP_003774375.1| NADH-dependent FMN reductase ox...    82   2e-17

>gi|300310976|ref|YP_003775068.1| NAD(P)H-dependent FMN reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 198

 Score =  358 bits (918), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/198 (95%), Positives = 196/198 (98%)

Query: 1   MTILLLAGSPSAPSRSTRLLHHVGDKLAQLGHRYARLDVRDLPGQAILRADWNDADIKAA 60
           MTILLLAGSPSAPSRSTRLLHHVGDKLAQLGHRYARL+VRDLPGQAILRADWNDA++KAA
Sbjct: 1   MTILLLAGSPSAPSRSTRLLHHVGDKLAQLGHRYARLEVRDLPGQAILRADWNDAEVKAA 60

Query: 61  LATVEEASAVVVATPVYKAAYSGILKAFLDLLPQFGLTNKLVLPLATGGSQSHMLALDYA 120
           LATV EASAVVVATPVYKAAYSGILKAFLDLLPQFGLT+KLVLPLATGGSQSHMLALDYA
Sbjct: 61  LATVAEASAVVVATPVYKAAYSGILKAFLDLLPQFGLTDKLVLPLATGGSQSHMLALDYA 120

Query: 121 LRPVLSSLNPKHVLPSIYATEAQVTWSEEKGLVLDAPIEARVNEGVEQLSASLLALHKAA 180
           LRPVLSSLNPKHVLPSIYATEAQVTWSEEKGLVLDAPIEARV+EGV QLSASLLALHKAA
Sbjct: 121 LRPVLSSLNPKHVLPSIYATEAQVTWSEEKGLVLDAPIEARVDEGVAQLSASLLALHKAA 180

Query: 181 PEEFREIPFSQLQYSVSY 198
           PE+FREIPFSQLQYSVSY
Sbjct: 181 PEQFREIPFSQLQYSVSY 198


>gi|300310283|ref|YP_003774375.1| NADH-dependent FMN reductase
           oxidorreductase [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score = 82.4 bits (202), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 74/131 (56%), Gaps = 7/131 (5%)

Query: 1   MTILLLAGSPSAPSRSTRLLHHVGDKLAQLGHRYARLDV---RDLPGQAILRADWNDAD- 56
           + ++++AGS   PSR+  LLH +  +L Q  H   R +V    DL GQ +   +      
Sbjct: 5   LQVVIVAGSGRRPSRTLGLLHAIAAQLGQ--HLVIRTEVVALSDLGGQLLSATELAQLPD 62

Query: 57  -IKAALATVEEASAVVVATPVYKAAYSGILKAFLDLLPQFGLTNKLVLPLATGGSQSHML 115
            ++  +A +E A  +V  +PVY+ +YSG+ K   DL+PQ  L  K VL  ATGGS  H L
Sbjct: 63  PVRQKIAAIESADVLVAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDRHAL 122

Query: 116 ALDYALRPVLS 126
           A+D+ LRP+ +
Sbjct: 123 AIDHQLRPLFA 133


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 552,231
Number of extensions: 20154
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 198
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 118
Effective length of database: 1,241,070
Effective search space: 146446260
Effective search space used: 146446260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)