BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1519.p
         (366 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310973|ref|YP_003775065.1| D-alanyl-D-alanine-endopeptidas...   637   0.0  
gi|300313783|ref|YP_003777875.1| D-alanyl-D-alanine carboxypepti...   217   1e-57

>gi|300310973|ref|YP_003775065.1| D-alanyl-D-alanine-endopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 366

 Score =  637 bits (1644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/367 (90%), Positives = 344/367 (93%), Gaps = 2/367 (0%)

Query: 1   MIKSALAIFTSVLFIHAGLAPAAAQTVNTTTKKAPAKKVAAKHPVHAVSKTAVKGSLNNR 60
           MIKSALA+ TS+LFIHAGLAPAAAQTVN T KK   K VA +     VS+T  KGSLNNR
Sbjct: 1   MIKSALAVLTSLLFIHAGLAPAAAQTVNNTAKKPVKKAVAKR-AAQPVSRTVAKGSLNNR 59

Query: 61  EKLVRKVSVVRGKRHVSYQRVSVAPAVPVVPPVMTAGDMAGLNLTPDPLALRSNVALVID 120
           EKLVRKV+VV+GKR VSYQRVS AP+VPVVPPVMTAGDMAGLNLTPDPLALRSNVALVID
Sbjct: 60  EKLVRKVTVVKGKRQVSYQRVSAAPSVPVVPPVMTAGDMAGLNLTPDPLALRSNVALVID 119

Query: 121 QASSQVLFEKNSSVALPIASVTKLMTALVVVEAHLNMEEVLTVTDDDVDREKHSSSRLRV 180
           QA+SQVLFEKNS VALPIASVTKLMTALVVVEA  NMEEVLTVTDDDVDREKHSSSRLRV
Sbjct: 120 QANSQVLFEKNSGVALPIASVTKLMTALVVVEARQNMEEVLTVTDDDVDREKHSSSRLRV 179

Query: 181 GSTLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTHYVDSTGL 240
           G+TLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDT YVDSTGL
Sbjct: 180 GATLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTRYVDSTGL 239

Query: 241 SSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHAMQYNSSNRLTSNKEWDIGL 300
           SSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHA+QYNSSNRLTSNKEWDIGL
Sbjct: 240 SSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHALQYNSSNRLTSNKEWDIGL 299

Query: 301 QKTGFINEAGHCLVMYTRIEGRPIVMVFLDSKGRLSHVGDATRMRKWLVEDQP-NLTRVK 359
           QKTGFINEAGHCLVMYTRIEGRPIVMVFLDSKGRLSHVGDA RMRKWLV+DQP NLTR+K
Sbjct: 300 QKTGFINEAGHCLVMYTRIEGRPIVMVFLDSKGRLSHVGDAARMRKWLVDDQPSNLTRMK 359

Query: 360 MVRADEG 366
           MVRADEG
Sbjct: 360 MVRADEG 366


>gi|300313783|ref|YP_003777875.1| D-alanyl-D-alanine
           carboxypeptidase [Herbaspirillum seropedicae SmR1]
          Length = 385

 Score =  217 bits (553), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/233 (49%), Positives = 159/233 (68%), Gaps = 2/233 (0%)

Query: 118 VIDQASSQVLFEKNSSVALPIASVTKLMTALVVV-EAHLNMEEVLTVTDDDVDREKHSSS 176
           V+D+ +   LFE+N+    PIASVTKLMTA+V + +  L M   L VT+DD+D  K + S
Sbjct: 148 VLDEQTGTPLFERNADTVAPIASVTKLMTAIVWLDQKQLAMGNRLEVTEDDLDTLKFTHS 207

Query: 177 RLRVGSTLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTHYVD 236
           RL VG++LSR DMLHIALMSSENRAA+AL R+YPGG PAF+AAMNA+A++LGM  TH+ +
Sbjct: 208 RLGVGASLSRADMLHIALMSSENRAAAALSRDYPGGRPAFIAAMNARAQALGMSHTHFEN 267

Query: 237 STGLSSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHAMQYNSSNRLTSNKEW 296
           +TGLS +NV++ R+LA LV AA  Y +IR  S D + M+      +QY +SNRL    + 
Sbjct: 268 ATGLSPENVSTPRELAALVQAANRYQLIRNDSLDKQKMINIGRGQLQYINSNRLIRYGQV 327

Query: 297 DIGLQKTGFINEAGHCLVMYTRI-EGRPIVMVFLDSKGRLSHVGDATRMRKWL 348
           +  +QKTGFINE+GH +V+   + + RP+++  L S        D  R+ KWL
Sbjct: 328 NASVQKTGFINESGHNMVLRMLVHDRRPVIVTMLGSGSADGSRLDGVRIAKWL 380


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.128    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 887,257
Number of extensions: 29337
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 3
Length of query: 366
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 280
Effective length of database: 1,212,660
Effective search space: 339544800
Effective search space used: 339544800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)