BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1516.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310970|ref|YP_003775062.1| drug/metabolite transporter (DM...   507   e-145

>gi|300310970|ref|YP_003775062.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score =  507 bits (1305), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 283/299 (94%), Positives = 289/299 (96%)

Query: 1   MMQSAAGASRSRQFLMRLVPLLFVLIWSTGFIVAKFGLPYAPPLTFLLLRFTGVLLVLLP 60
           MM S AGASR RQ LM LVPLLFVLIWSTGFIVAKFGLPYAPPLTFLLLRFTGVLLVLLP
Sbjct: 1   MMPSPAGASRPRQLLMSLVPLLFVLIWSTGFIVAKFGLPYAPPLTFLLLRFTGVLLVLLP 60

Query: 61  LVLLFRAPWPHGRIRHVALAGVLLQAGYLAGVWCAIKIGMPAGLSALIVGLQPILTAFAA 120
           LVLLFRAPWPHGRIRHVA+AGVLLQAGYLAGVWCAIKIGMPAGLSALIVGLQPILTAFAA
Sbjct: 61  LVLLFRAPWPHGRIRHVAVAGVLLQAGYLAGVWCAIKIGMPAGLSALIVGLQPILTAFAA 120

Query: 121 PLLGESVRGRQWVGLALGLCGVGLVVANKISLIGLSTASIALCVFALLCITAGTLYQKRY 180
           PLLGESVRGRQW+GLALGLCGVGLVVANKISLIGLSTASIALCVFALLCITAGTLYQKRY
Sbjct: 121 PLLGESVRGRQWLGLALGLCGVGLVVANKISLIGLSTASIALCVFALLCITAGTLYQKRY 180

Query: 181 CAHFDLRTGTVIQFMASIVVVLPFAVALEGFDWHVSNVHWTPQFIGALLWSVLALSIGAI 240
           CAHFDLRTGT IQFMASIVVVLP AVA+EG DW +SNV WTPQFIGALLWSVLALSIGAI
Sbjct: 181 CAHFDLRTGTAIQFMASIVVVLPLAVAVEGLDWRLSNVAWTPQFIGALLWSVLALSIGAI 240

Query: 241 FLLFALIRRSAATSVTSLLYLTPPTTAVMAWLIFGEAFSLIGALGMLLGVIGVAFVVRK 299
           FLLFALIRRSAATSVTSLLYLTPPTTAVMAWL+FGEAFSLIGALGML+GVIGVAFVVRK
Sbjct: 241 FLLFALIRRSAATSVTSLLYLTPPTTAVMAWLMFGEAFSLIGALGMLVGVIGVAFVVRK 299


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.144    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 835,645
Number of extensions: 31250
Number of successful extensions: 216
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 4
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 130 (54.7 bits)