BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1512.p
         (281 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310966|ref|YP_003775058.1| transmembrane protein [Herbaspi...   460   e-131

>gi|300310966|ref|YP_003775058.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 280

 Score =  460 bits (1183), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 252/280 (90%), Positives = 268/280 (95%), Gaps = 1/280 (0%)

Query: 1   MRLFLASFGRALLAQLHIRMLWLTVLPFVVSLALWAVCLWLGLQPIIDWLQAYFVANSMF 60
           MRLF+ASFGRALLAQLHIRMLWLTVLPFVVSLALWA+CLWLGLQP+IDWLQ YFV++ MF
Sbjct: 1   MRLFIASFGRALLAQLHIRMLWLTVLPFVVSLALWALCLWLGLQPVIDWLQDYFVSHGMF 60

Query: 61  GEIGSMLAWFGMSALKTVLVPLLAMWTLLPLMILTALVFVGLFTIPAIARHIGARHYPML 120
           GEIG MLAWFGM ALKTVLVPLLAMWTLLPLMI+TALVFVGLFTIPAIARHIGARHYPML
Sbjct: 61  GEIGGMLAWFGMGALKTVLVPLLAMWTLLPLMIITALVFVGLFTIPAIARHIGARHYPML 120

Query: 121 EKRHGGSVAGSLWTSLWCFAVFTILWLATIWVFLIPPLAFVLHSLLWGWLTYRVMAYDTL 180
           EKR+GGSVAGSLWTSLWCFAVFT+LW++TIWVFLIPPLA V+HSLLWGWLTYRVMAYDTL
Sbjct: 121 EKRYGGSVAGSLWTSLWCFAVFTVLWISTIWVFLIPPLALVIHSLLWGWLTYRVMAYDTL 180

Query: 181 ADYASAEERRVVLHLHRWPLLLVGTIAGALGAAPTLLWLGGVLSVILLPALAAVAIWLYV 240
           ADYASAEERR VLHLHRWPLL VGT+AGALGAAPTLLWLGGVLSVILLPALAA+AIWLYV
Sbjct: 181 ADYASAEERRAVLHLHRWPLLAVGTVAGALGAAPTLLWLGGVLSVILLPALAALAIWLYV 240

Query: 241 LVFVFTALWFQFYCLEALLRYRNGQAPDGPPDGEVLDVTP 280
           +VFVFT LWFQFYCLEALLR+R GQAPDG P GE+ DVTP
Sbjct: 241 VVFVFTGLWFQFYCLEALLRHRRGQAPDG-PQGEIKDVTP 279


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.144    0.495 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 995,561
Number of extensions: 41461
Number of successful extensions: 244
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,222,130
Effective search space: 240759610
Effective search space used: 240759610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 130 (54.7 bits)