BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1509.p
         (327 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310963|ref|YP_003775055.1| signal peptide protein [Herbasp...   631   0.0  

>gi|300310963|ref|YP_003775055.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 327

 Score =  631 bits (1627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/327 (93%), Positives = 314/327 (96%)

Query: 1   MLRRFSQLLSLSLRAACVSAVLTASAHANVVVVLNSGDASVSLLDETGEKELSTFSVGKE 60
           MLRR  Q  SL+LRAACVSAVL  SAHANVVVVLNSGDASVSLLDETGEKELSTFSVGKE
Sbjct: 1   MLRRIRQYFSLTLRAACVSAVLAVSAHANVVVVLNSGDASVSLLDETGEKELSTFSVGKE 60

Query: 61  PHHLMATPDNKSLIVASATGNQLLFLDPKTGAVQRKLPDIIDPYQIGFTPDQKWFVATGL 120
           PHHLMATPDNKSLIVASATGNQLLFLDPKTGAVQRK+ DIIDPYQIGFTPDQKWFVATGL
Sbjct: 61  PHHLMATPDNKSLIVASATGNQLLFLDPKTGAVQRKIRDIIDPYQIGFTPDQKWFVATGL 120

Query: 121 RLDRVDVYRYDGHDLKLSKRIPLAKTPSHIAFDNDSTTAFITQQGSDQVSAIDLATQQVK 180
           RLDRVDVY YDG DLKLSKRIPL KTPSHIAFDN STTAFITQQGSDQ+SAIDLATQQVK
Sbjct: 121 RLDRVDVYSYDGQDLKLSKRIPLPKTPSHIAFDNASTTAFITQQGSDQISAIDLATQQVK 180

Query: 181 WTMPVGKLPAGIIMTPDNKYLLVGIMGADYVAVIDWRTQKVVKKIKTGIGAHNFRGQGDK 240
           WTMPVGKLPAGIIMTPDNKYL+VGIMGADYV VIDWRTQK+VKKIKTG+GAHNFRGQGDK
Sbjct: 181 WTMPVGKLPAGIIMTPDNKYLMVGIMGADYVEVIDWRTQKIVKKIKTGVGAHNFRGQGDK 240

Query: 241 RFVYVSNRVANTISVLDMHTLENVGTIKVPGGPDCMEVTSDGKTMWATLRWVKKVAVIDL 300
           RFVYVSNRVANTISV+DM TLENVGTIKVPGGPDCMEVTSDGKTMWATLRWVKKVAVIDL
Sbjct: 241 RFVYVSNRVANTISVVDMTTLENVGTIKVPGGPDCMEVTSDGKTMWATLRWVKKVAVIDL 300

Query: 301 ASRSVTKVIPVGRSPHGIYLYNRAPDI 327
           ASRSVTKVIPVGRSPHGIYL+NRAPD+
Sbjct: 301 ASRSVTKVIPVGRSPHGIYLHNRAPDL 327


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,007,694
Number of extensions: 41054
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 242
Effective length of database: 1,217,395
Effective search space: 294609590
Effective search space used: 294609590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)