BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1505.p
         (469 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310959|ref|YP_003775051.1| NA+/H+ antiporter permease [Her...   753   0.0  

>gi|300310959|ref|YP_003775051.1| NA+/H+ antiporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 476

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/449 (90%), Positives = 426/449 (94%)

Query: 21  GWSAELDGASLSLAWALPFAGVLLSIAVLPLLAPALWHHHFGKIAAAWGLALLLPLVSVY 80
           GWSAELDGA LSLAWA+PFAGVLLSIAVLPLL PALWHHHFGKIAAAW LA LLP  +++
Sbjct: 28  GWSAELDGAGLSLAWAIPFAGVLLSIAVLPLLMPALWHHHFGKIAAAWALAFLLPFAALH 87

Query: 81  GSHAALAISVHALVAEYLPFIILLSALFTVAGGICVRGNLHGTPALNTGLLALGTLLASV 140
           G+HAALAISVHALVAEYLPFIILL+ALFTVAGGICVRGNLHGTP LNTGLLALGTLLAS+
Sbjct: 88  GAHAALAISVHALVAEYLPFIILLTALFTVAGGICVRGNLHGTPGLNTGLLALGTLLASI 147

Query: 141 MGTTGAAMLLIRPLIRANDDRKHTVHVVVFFIFLVANAGGSLTPLGDPPLFLGFLKGVDF 200
           MGTTGAAMLLIRPLIRANDDRKHTVHVVVFFIFLVANAGGSLTPLGDPPLFLGFLKGVDF
Sbjct: 148 MGTTGAAMLLIRPLIRANDDRKHTVHVVVFFIFLVANAGGSLTPLGDPPLFLGFLKGVDF 207

Query: 201 FWTARHLLGPMLFLCIALLSIFYLLDRHFYLNREERRAFDPTPDSSLQLEGKLNFLLLLA 260
           FWTARHLLGPM FLC ALL IFY LDRHFYLNREERR  DPTPDS+ QLEG++NFLLL A
Sbjct: 208 FWTARHLLGPMAFLCGALLLIFYGLDRHFYLNREERRPLDPTPDSAWQLEGRVNFLLLGA 267

Query: 261 VVALVLMSGLWKPGVAIELMGVPLQWQNLLRDGALLVVIVLSLWLTPSSARQGNEFGWGP 320
           VV LVLMSGLWKPGVA ELMG PL+WQNLLRDGALL VI++SLWLTP SAR GNEFGWGP
Sbjct: 268 VVGLVLMSGLWKPGVATELMGAPLEWQNLLRDGALLGVILVSLWLTPKSARSGNEFGWGP 327

Query: 321 MLEVGKLFAAIFLTIAPVIAMLRAGEQGAFAAVVKAVSGPDGRPDDVMYFWMTGLLSSFL 380
           MLEVGKLFAAIFLTIAPVIAMLRAGEQGAFAAVV+AV+GPDG+PDDVMYFWMTGLLSSFL
Sbjct: 328 MLEVGKLFAAIFLTIAPVIAMLRAGEQGAFAAVVRAVTGPDGKPDDVMYFWMTGLLSSFL 387

Query: 381 DNAPTYLVFFNTASGDARELMGPLASTLAAISAGAVFMGANSYIGNAPNMMVKAIAEERG 440
           DNAPTYLVFFNTASGDARELMGPLASTLAAISAGAVFMGANSYIGNAPNMMVKAIAEERG
Sbjct: 388 DNAPTYLVFFNTASGDARELMGPLASTLAAISAGAVFMGANSYIGNAPNMMVKAIAEERG 447

Query: 441 VRMPSFFGYLAWSAGILVPLFIVMSLLFF 469
           +RMPSFFGY+AWSAGIL PLFIVMS LFF
Sbjct: 448 IRMPSFFGYMAWSAGILAPLFIVMSFLFF 476


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.143    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,256,943
Number of extensions: 46578
Number of successful extensions: 293
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 380
Effective length of database: 1,198,455
Effective search space: 455412900
Effective search space used: 455412900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)