BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1501.p (357 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310953|ref|YP_003775045.1| thioredoxin reductase oxidoredu... 721 0.0 gi|300313594|ref|YP_003777686.1| alkyl hydroperoxide reductase s... 70 3e-13 gi|300311227|ref|YP_003775319.1| thioredoxin reductase oxidoredu... 66 4e-12 >gi|300310953|ref|YP_003775045.1| thioredoxin reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 357 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/357 (99%), Positives = 356/357 (99%) Query: 1 MENNVQTAAVNGVIDADAVIIGAGPVGLFQVFELGLLEIKAHVIDSLPVVGGQCVELYPD 60 MENNVQTAA NGVIDADAVIIGAGPVGLFQVFELGLLEIKAHVIDSLPVVGGQCVELYPD Sbjct: 1 MENNVQTAAANGVIDADAVIIGAGPVGLFQVFELGLLEIKAHVIDSLPVVGGQCVELYPD 60 Query: 61 KPIYDIPAVPVCTGQELTDNLLKQIEPFSPTFHLGQEVTVVNKREDGRFDVETSTGTKFI 120 KPIYDIPAVPVCTGQELTDNLLKQIEPFSPTFHLGQEVT+VNKREDGRFDVETSTGTKFI Sbjct: 61 KPIYDIPAVPVCTGQELTDNLLKQIEPFSPTFHLGQEVTLVNKREDGRFDVETSTGTKFI 120 Query: 121 TKTIFIAAGVGSFQPRTLKVEGIEQFEGSQVFYRVKDPALFEGKNIVICGGGDSALDWAL 180 TKTIFIAAGVGSFQPRTLKVEGIEQFEGSQVFYRVKDPALFEGKNIVICGGGDSALDWAL Sbjct: 121 TKTIFIAAGVGSFQPRTLKVEGIEQFEGSQVFYRVKDPALFEGKNIVICGGGDSALDWAL 180 Query: 181 NFVGKAESVILLHRREEFRAAPASVAKMKELCEQYEMQLVIGQVTGTEIKDGKLAEVKVT 240 NFVGKAESVILLHRREEFRAAPASVAKMKELCEQYEMQL+IGQVTGTEIKDGKLAEVKVT Sbjct: 181 NFVGKAESVILLHRREEFRAAPASVAKMKELCEQYEMQLLIGQVTGTEIKDGKLAEVKVT 240 Query: 241 GADGVTRRLPLDMLLVFFGLSPKLGPIAEWGLEIERKQLKVMDTEKFETNVPGIFAVGDI 300 GADGVTRRLPLDMLLVFFGLSPKLGPIAEWGLEIERKQLKVMDTEKFETNVPGIFAVGDI Sbjct: 241 GADGVTRRLPLDMLLVFFGLSPKLGPIAEWGLEIERKQLKVMDTEKFETNVPGIFAVGDI 300 Query: 301 NTYPGKKKLILSGFHEAALAAFGAAPYIFPEKKIHMQYTTTSPKLHKILGVESPVFD 357 NTYPGKKKLILSGFHEAALAAFGAAPYIFPEKKIHMQYTTTSPKLHKILGVESPVFD Sbjct: 301 NTYPGKKKLILSGFHEAALAAFGAAPYIFPEKKIHMQYTTTSPKLHKILGVESPVFD 357 >gi|300313594|ref|YP_003777686.1| alkyl hydroperoxide reductase subunit F [Herbaspirillum seropedicae SmR1] Length = 533 Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 106/229 (46%), Gaps = 28/229 (12%) Query: 106 DGRFDVETSTGTKFITKTIFIAAGVGSFQPRTLKVEGIEQFEGSQVFYRVK-DPALFEGK 164 D +V+ + G KT+ ++ G + R + V G ++++ V Y D LF+GK Sbjct: 299 DKLIEVKLANGGVLKGKTVILSTGA---RWRNVNVPGEQEYKNKGVAYCPHCDGPLFKGK 355 Query: 165 NIVICGGGDSALDWALNFVGKAESVILLHRREEFRAAPASVAKMKEL--------CEQYE 216 + + GGG+S ++ A++ G V L+ E +A V K+K L + E Sbjct: 356 RVSVIGGGNSGVEAAIDLAGIVAHVTLIEFAAELKADAVLVRKLKSLPNVTIVTSAQTTE 415 Query: 217 MQLVIGQVTGTEIKDGKLAEVKVTGADGVTRRLPLDMLLVFFGLSPKLGPIAEW--GLEI 274 + +V G K+ + E+K +PL+ + V GL P EW G Sbjct: 416 ITGDGQRVNGISYKERETGEIK---------HVPLEGVFVQIGLVPN----TEWLKGTLA 462 Query: 275 ERKQLKVMDTEKFETNVPGIFAVGDINTYPGKKKLILSGF-HEAALAAF 322 K ++ K +T++PG+FA GD+ T P K+ +I G AAL+AF Sbjct: 463 LSKHGEIEIDAKGQTSIPGVFAAGDVTTVPYKQIVIAVGAGATAALSAF 511 >gi|300311227|ref|YP_003775319.1| thioredoxin reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 318 Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 83/328 (25%), Positives = 145/328 (44%), Gaps = 36/328 (10%) Query: 16 ADAVIIGAGPVGLFQVFELGLLEIKAHVIDSLPVVGGQCVELYPDKPIYDIPAVPV-CTG 74 A +I+G+GP G + + +A++ L Q +L + + P P+ G Sbjct: 8 AKVLILGSGPAG----YSAAVYAARANLNPVLITGVEQGGQLMTTTDVENWPGDPLGVQG 63 Query: 75 QELTDNLLKQIEPFSPTFHLGQ-EVTVVNKREDGRFDVETSTGTKFITKTIFIAAGVGSF 133 EL LL+ E F T +++R F + +G ++ + IA G + Sbjct: 64 PELMQRLLQHAERFKTEIIFDHIHTTKLSERP---FRLIGDSG-EYTADALIIATGASA- 118 Query: 134 QPRTLKVEGIEQFEGSQVFYRVK-DPALFEGKNIVICGGGDSALDWALNFVGKAESVILL 192 + L + + F G V D + GK + + GGG++A++ AL A V ++ Sbjct: 119 --QYLGLPSEQAFMGRGVSACATCDGFFYRGKEVAVVGGGNTAVEEALYLSNIASKVTII 176 Query: 193 HRREEFRAAPASVAKM------KELCEQYEMQL--VIGQVTG-TEIKDGKLAEVKVTGAD 243 HRR++FRA P + ++ ++ Q+ L V+G +G T IK +K T D Sbjct: 177 HRRDKFRAEPILIDRLLHKVSEGKIAIQWHHTLDEVVGDDSGVTGIK------IKSTQDD 230 Query: 244 GVTRRLPLDMLLVFFGLSPKLGPIAEWGLEIERKQLKV-MDTEKF--ETNVPGIFAVGDI 300 +T +P+ L + G P I E L ++ LK TE F T++ G+FA GD+ Sbjct: 231 AIT-EIPVHGLFIAIGHKPNT-SIFEGQLSMQNGYLKTRTGTEGFATATSIDGVFAAGDV 288 Query: 301 NTYPGKKKLILSGFHEAALAAFGAAPYI 328 + ++ + +G +AA A Y+ Sbjct: 289 QDHVYRQAITSAG--TGCMAALDAQRYL 314 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.139 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,063,420 Number of extensions: 42852 Number of successful extensions: 134 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 3 Length of query: 357 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 271 Effective length of database: 1,212,660 Effective search space: 328630860 Effective search space used: 328630860 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)