BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1498.p
         (216 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310949|ref|YP_003775041.1| endonuclease III protein [Herba...   446   e-127
gi|300313203|ref|YP_003777295.1| A/G-specific adenine glycosylas...    59   4e-10

>gi|300310949|ref|YP_003775041.1| endonuclease III protein
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  446 bits (1147), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 214/216 (99%), Positives = 216/216 (100%)

Query: 1   MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60
           MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT
Sbjct: 1   MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60

Query: 61  PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEHGGEVPESREALEALPGVGRK 120
           PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEHGG+VPESREALEALPGVGRK
Sbjct: 61  PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEHGGQVPESREALEALPGVGRK 120

Query: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180
           TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI
Sbjct: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180

Query: 181 LHGRYTCIARKPQCWNCIIADLCEFKQKTPLPAKGV 216
           LHGRYTCIARKPQCWNCIIADLCEFKQKTPLP+KGV
Sbjct: 181 LHGRYTCIARKPQCWNCIIADLCEFKQKTPLPSKGV 216


>gi|300313203|ref|YP_003777295.1| A/G-specific adenine glycosylase
           [Herbaspirillum seropedicae SmR1]
          Length = 378

 Score = 58.5 bits (140), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 6/139 (4%)

Query: 70  DQLMPYIQTIGLYRTKAKNVIETCRILIEEHGGEVPESREALEALPGVGRKTANVVLNTA 129
           + +M     +G Y T+A+N+ +  + ++E++GG  P+  + L  LPG+GR TA  +   +
Sbjct: 90  EDVMALWSGLGYY-TRARNLHKCAQRVVEQYGGRFPDDPDLLADLPGIGRSTAAAIAAFS 148

Query: 130 FGHPTIAVDTHIFRVSNRT-GLAPGKDVDEVERKL-IKFVAPEFRQDAHHW---LILHGR 184
           +G     +D ++ RV  R  G+        +E KL ++ VA    QD   +   L+  G 
Sbjct: 149 YGRRAAILDGNVKRVFARVFGIDGYPGAKPIEDKLWLRAVALLPDQDIESYTQGLMDLGA 208

Query: 185 YTCIARKPQCWNCIIADLC 203
             C+  KP C  C +A  C
Sbjct: 209 TLCVRGKPACERCPLAGRC 227


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 604,359
Number of extensions: 22719
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 135
Effective length of database: 1,236,335
Effective search space: 166905225
Effective search space used: 166905225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)