BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1493.p
         (747 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310943|ref|YP_003775035.1| site-specific recombinase trans...  1240   0.0  

>gi|300310943|ref|YP_003775035.1| site-specific recombinase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 738

 Score = 1240 bits (3209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/740 (90%), Positives = 696/740 (94%), Gaps = 2/740 (0%)

Query: 8   MLVVWRRMRHGMQARYMDRQDVGRQLEVLMRRIDPAASWHERANWMIDVAEWLRHRPAVS 67
           MLVVWRRMRHGMQARYMDRQDVGRQLEVLMRR DPA+SWHERANWMIDV EWLRHRPAVS
Sbjct: 1   MLVVWRRMRHGMQARYMDRQDVGRQLEVLMRRADPASSWHERANWMIDVVEWLRHRPAVS 60

Query: 68  LLDRQAWHQVRRQRLVIMLDWLDQHRDVRRAVQNALQKTLREANGPELFSTTGLPHEPGF 127
            LDR+AWHQVRR+RL I+LDWLDQHR+VRRAVQNALQKTLREA GPELFSTTGLPHEPGF
Sbjct: 61  FLDRRAWHQVRRERLAILLDWLDQHREVRRAVQNALQKTLREATGPELFSTTGLPHEPGF 120

Query: 128 FGELSERLARLILPRHLSPTDLSSLFTAMFPDPDDAAWLLELDNDLLVRLWKLMADDGIS 187
           FGELSERLARLILPRHLSPTDLSSLFTAMFPDPDDA WLLELDNDLL RLWKLMADDGIS
Sbjct: 121 FGELSERLARLILPRHLSPTDLSSLFTAMFPDPDDAVWLLELDNDLLQRLWKLMADDGIS 180

Query: 188 HMYWQQIEEAITYLTTTVVADGISPAFRQRLEPKMPMRATPFLALRREMESWLRAQPGDL 247
           HMYWQQIEEAITYLTTTVVADGISPAFRQRLEPKMPMRATPFLALRREME+WLRAQPGD+
Sbjct: 181 HMYWQQIEEAITYLTTTVVADGISPAFRQRLEPKMPMRATPFLALRREMEAWLRAQPGDM 240

Query: 248 GALRSVRMLVAVCHAQTDRIYAHLDEYGVSVSLVYRVERMRAHLQRIGRLIDVRSGVPGP 307
           GALRSVRMLVAVCHAQTDRIYAHLDEYGVSVSLVYRVERMRAHLQRIGRLIDVRSG+PGP
Sbjct: 241 GALRSVRMLVAVCHAQTDRIYAHLDEYGVSVSLVYRVERMRAHLQRIGRLIDVRSGMPGP 300

Query: 308 LISPAVPGLAAKAGAGAGRMQLLLCDLIAAHHHRDSVRGLMRRSFALLARKMVERNADHR 367
            ISPAVPG+A K GAG  R+QLLLCDLI+AHHHRDSVRGLMRRSFALLARKMVERNADHR
Sbjct: 301 AISPAVPGMAVKPGAG--RVQLLLCDLISAHHHRDSVRGLMRRSFALLARKMVERNADHR 358

Query: 368 EQAIARDGAGYRKVMRAGLLGGAVIAGTALVKQSLSTLGVVHFVDGALASLNYAASFLLI 427
           EQAIARD AGYR+VMRAGLLGGAVIA TAL+KQSLSTLGVVHFVDGALASLNYAASFLLI
Sbjct: 359 EQAIARDAAGYRRVMRAGLLGGAVIAATALLKQSLSTLGVVHFVDGALASLNYAASFLLI 418

Query: 428 AALGGVLATRQPAVTAPALASRMGDLDTEGMRELIAESGQLLRSQSAGIFGNLLAVIPVT 487
           AALGGVLATRQPAVTAPALASRMGDLD EGMR+LIAESG+LLRSQSAGIFGNLLAV+PVT
Sbjct: 419 AALGGVLATRQPAVTAPALASRMGDLDAEGMRDLIAESGRLLRSQSAGIFGNLLAVVPVT 478

Query: 488 AALCALGWFALGGKPMSLETARQTLASLSLVGPTPLYAALTGVLLWLASLAAGFADNWFA 547
           AALCALGWFAL  +PMSLE ARQ++ASLSLVGPTPLYAALTGVLLWLASL AGFADNWFA
Sbjct: 479 AALCALGWFALDRRPMSLEAARQSVASLSLVGPTPLYAALTGVLLWLASLVAGFADNWFA 538

Query: 548 LRRVREVVSNHRRLVHGLGPLRAQRCAAWLERNVATIAGSLALALLLGMAPVVAAFFSLP 607
           LRRVREVVSNHRRLVHGLG LRAQRCAAWLERNVATIAGS ALALLLGMAPVVAAFFSLP
Sbjct: 539 LRRVREVVSNHRRLVHGLGALRAQRCAAWLERNVATIAGSFALALLLGMAPVVAAFFSLP 598

Query: 608 LDIRHVTLAAGTLTAAVFSLGWSALLTPAFWLAAGGVAVTAMLSVAVAFAFALALALRSR 667
           LDIRHVTLAAGTLTAA FSLGW AL TPAFWLAAGGVA+T +LSVAVAFA ALALALRSR
Sbjct: 599 LDIRHVTLAAGTLTAAAFSLGWQALTTPAFWLAAGGVAITGLLSVAVAFACALALALRSR 658

Query: 668 DLPRRARNVAMRAVLRRFIIRPLFFILPLPAHAAVQDESDDDDEDDDDGTDGPHGDDPEP 727
           DLPRRARNVAMRAVLRRF++RPLFFILP  AHAAV+DESD+D++DDDDG DGP  D    
Sbjct: 659 DLPRRARNVAMRAVLRRFVVRPLFFILPERAHAAVRDESDEDEQDDDDGGDGPGPDHQMS 718

Query: 728 RLASLEHRKDMHIQASRQVA 747
           RLAS+E   ++     R VA
Sbjct: 719 RLASVERDDEVQSSVRRHVA 738


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,112,753
Number of extensions: 83963
Number of successful extensions: 444
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 1
Length of query: 747
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 655
Effective length of database: 1,184,250
Effective search space: 775683750
Effective search space used: 775683750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 134 (56.2 bits)