BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1487.p
         (140 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310936|ref|YP_003775028.1| transcription regulator protein...   249   4e-68
gi|300310934|ref|YP_003775026.1| Pb-specific transcription regul...    69   2e-13

>gi|300310936|ref|YP_003775028.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 141

 Score =  249 bits (637), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 120/137 (87%), Positives = 128/137 (93%)

Query: 1   MNIGEAASASGVSAKMIRHYEETGLIPKAGRTDAGYRVYGQRDVHLLRFVRQARQLGFSM 60
           MNIGEAASASGVSAKMIRHYEETGLIP+A RTDAGYRVYGQRDVHLLRF+RQARQLGFSM
Sbjct: 1   MNIGEAASASGVSAKMIRHYEETGLIPRASRTDAGYRVYGQRDVHLLRFIRQARQLGFSM 60

Query: 61  AQVSDLIGLWLDQSRPSRKVKQLAQTHIGELDQRIHELQTMKATLERLVQDCHGDHRPDC 120
           AQVSDLIGLWLDQSRPSRKVKQLAQTHI EL+QRI ELQ MKATLE+LVQ CHGD+RPDC
Sbjct: 61  AQVSDLIGLWLDQSRPSRKVKQLAQTHIAELEQRISELQGMKATLEQLVQGCHGDNRPDC 120

Query: 121 PILDALGAEQDCCSPAG 137
           PIL+ALG + DCC+  G
Sbjct: 121 PILEALGGDADCCAVHG 137


>gi|300310934|ref|YP_003775026.1| Pb-specific transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 150

 Score = 68.6 bits (166), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 1/141 (0%)

Query: 1   MNIGEAASASGVSAKMIRHYEETGLIPKAGRTDAGYRVYGQRDVHLLRFVRQARQLGFSM 60
           + IGE A+ +    + +R+YE+  L+P+  R+ A YR+YG+R V  L+F+R  R L  ++
Sbjct: 4   LKIGELAAKADCPVETVRYYEKEALLPEPTRSQANYRLYGERHVERLQFIRHCRSLDMTL 63

Query: 61  AQVSDLIGLWLDQSRPSRKVKQLAQTHIGELDQRIHELQTMKATLERLVQDCH-GDHRPD 119
            +V +L+ L     +    V  L   HIG + +RI +LQ ++A L +L   C       D
Sbjct: 64  DEVRELLRLRDAPEQDCGGVNALLDKHIGHVAERIAQLQALQAQLRQLRAQCEVAQPARD 123

Query: 120 CPILDALGAEQDCCSPAGTPS 140
           C IL  L +  D   PA   S
Sbjct: 124 CGILQGLASLPDDLKPANLGS 144


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 443,848
Number of extensions: 17044
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 140
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 64
Effective length of database: 1,260,010
Effective search space: 80640640
Effective search space used: 80640640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)