BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1485.p
         (150 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310934|ref|YP_003775026.1| Pb-specific transcription regul...   249   9e-68
gi|300310936|ref|YP_003775028.1| transcription regulator protein...    84   6e-18

>gi|300310934|ref|YP_003775026.1| Pb-specific transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 150

 Score =  249 bits (635), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 135/150 (90%), Positives = 144/150 (96%)

Query: 1   MDTLKIGELAGQADCPVETIRYYEKEALLPEPTRSPSNYRLYGPRHVERLQFIRHCRSLD 60
           MDTLKIGELA +ADCPVET+RYYEKEALLPEPTRS +NYRLYG RHVERLQFIRHCRSLD
Sbjct: 1   MDTLKIGELAAKADCPVETVRYYEKEALLPEPTRSQANYRLYGERHVERLQFIRHCRSLD 60

Query: 61  MTLEEVRELLRLRDAPEQNCGEVNALLDKHIGHVAQRIAQLQALQAQLQQLRAQCETEQP 120
           MTL+EVRELLRLRDAPEQ+CG VNALLDKHIGHVA+RIAQLQALQAQL+QLRAQCE  QP
Sbjct: 61  MTLDEVRELLRLRDAPEQDCGGVNALLDKHIGHVAERIAQLQALQAQLRQLRAQCEVAQP 120

Query: 121 ARDCGILQGLASLPDEMKPANLGSHGGGCH 150
           ARDCGILQGLASLPD++KPANLGSHGGGCH
Sbjct: 121 ARDCGILQGLASLPDDLKPANLGSHGGGCH 150


>gi|300310936|ref|YP_003775028.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 141

 Score = 83.6 bits (205), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 1/132 (0%)

Query: 4   LKIGELAGQADCPVETIRYYEKEALLPEPTRSPSNYRLYGPRHVERLQFIRHCRSLDMTL 63
           + IGE A  +    + IR+YE+  L+P  +R+ + YR+YG R V  L+FIR  R L  ++
Sbjct: 1   MNIGEAASASGVSAKMIRHYEETGLIPRASRTDAGYRVYGQRDVHLLRFIRQARQLGFSM 60

Query: 64  EEVRELLRLRDAPEQNCGEVNALLDKHIGHVAQRIAQLQALQAQLQQLRAQCETEQPARD 123
            +V +L+ L     +   +V  L   HI  + QRI++LQ ++A L+QL   C  +    D
Sbjct: 61  AQVSDLIGLWLDQSRPSRKVKQLAQTHIAELEQRISELQGMKATLEQLVQGCHGDNRP-D 119

Query: 124 CGILQGLASLPD 135
           C IL+ L    D
Sbjct: 120 CPILEALGGDAD 131


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 401,590
Number of extensions: 11601
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 2
Length of query: 150
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 73
Effective length of database: 1,255,275
Effective search space: 91635075
Effective search space used: 91635075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)