BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1484.p (777 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPas... 1304 0.0 gi|300310937|ref|YP_003775029.1| heavy metal translocating P-typ... 325 1e-89 gi|300311699|ref|YP_003775791.1| cation transport P-type ATPase ... 216 5e-57 gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase ... 186 6e-48 gi|300313072|ref|YP_003777164.1| high-affinity K+ transport syst... 111 2e-25 >gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 778 Score = 1304 bits (3374), Expect = 0.0, Method: Compositional matrix adjust. Identities = 671/745 (90%), Positives = 705/745 (94%), Gaps = 1/745 (0%) Query: 34 THSHAHGAACCSSPSTPFP-PARRLEGATEQAVFFIQKMDCPTEEKLIRERLTQMQGVGA 92 T S G AC S P PA RLEGATE+AVFFIQKMDCPTEEKLIRERL+QM GVG Sbjct: 34 TSSCCAGHACASEQERSAPIPAARLEGATEEAVFFIQKMDCPTEEKLIRERLSQMSGVGT 93 Query: 93 LEFNLIQRELTVQHQLPSIAPLVATLKALDMLPAVKSDSLDAEAGRDAPDQAAAYRIPAR 152 LEFNLIQRELTVQHQLPSIAPLVATLKALDMLPAVKSDSLDAEAGRDAPDQAAAYRIPAR Sbjct: 94 LEFNLIQRELTVQHQLPSIAPLVATLKALDMLPAVKSDSLDAEAGRDAPDQAAAYRIPAR 153 Query: 153 RWALLGLAGVAALGAELLAWTSGNDRSLPVIALALAAILLGGLGTLKKGWIALRNFSLNM 212 RW LLGLAGVAALGAE+LAW+SG++RSLPVI LALAAILLGGLGTLKKGWIALRNFSLNM Sbjct: 154 RWILLGLAGVAALGAEVLAWSSGDERSLPVIGLALAAILLGGLGTLKKGWIALRNFSLNM 213 Query: 213 NFLMSLAVIGAAAIGQWPEAAMVIVLFTLAEMIEALSLDRARNAIAGLMAMTPDLASLRG 272 NFLMSLAVIGAA IGQWPEAA+VIVLFTLAEMIEALSLDRARNAIAGL+AMTPD+A+ RG Sbjct: 214 NFLMSLAVIGAAVIGQWPEAAVVIVLFTLAEMIEALSLDRARNAIAGLLAMTPDMATRRG 273 Query: 273 ADGVWKSVPANTVTVDATVRVAPGERVPLDGVLLSGSTSINQAPITGESIPVQKQAGDPV 332 DGVW +VPA TVTVD TVRVAPGERVPLDG++LSGSTSINQAPITGESIPVQKQAGDPV Sbjct: 274 EDGVWSTVPARTVTVDDTVRVAPGERVPLDGLVLSGSTSINQAPITGESIPVQKQAGDPV 333 Query: 333 FAGTINEQGAFEMRVTAVQSDSTLSRIVKSVQQAQGQRAPTQRFVDNFARYYIPAVVLMA 392 FAGTINEQGAFEMRVTA Q DSTL+RIVKSVQQAQGQRAPTQRFVDNFARYYIPAVV+MA Sbjct: 334 FAGTINEQGAFEMRVTAAQGDSTLARIVKSVQQAQGQRAPTQRFVDNFARYYIPAVVVMA 393 Query: 393 LLVALLPPLLAGAAFQPWLYKALVLLVIACPCALVISTPVTIVSALASAAKLGILVKGGV 452 +LVALLPPLLAGAAFQPWLYKALVLLVIACPCALVISTPVTIVS LASAA+ GILVKGGV Sbjct: 394 VLVALLPPLLAGAAFQPWLYKALVLLVIACPCALVISTPVTIVSGLASAARHGILVKGGV 453 Query: 453 YLEQGRQLRALAVDKTGTLTFGKPRVTDVLTLQAGADQQALLQLAVSLAARSDHPVSRAI 512 YLEQGRQLRALA+DKTGTLTFGKPRVTDV++LQA ADQQALLQLAVSLAARSDHPVSRAI Sbjct: 454 YLEQGRQLRALALDKTGTLTFGKPRVTDVVSLQAQADQQALLQLAVSLAARSDHPVSRAI 513 Query: 513 AAQEEIVTLEVSEFAALAGRGVQGRIAGQLFHLGNHRLIHELGQCSPALEARLQAFEKQG 572 AAQEEI T+EVSEFAALAGRGVQGRI GQL HLGNHRL+HELGQCSP LEARLQAFEKQG Sbjct: 514 AAQEEIATVEVSEFAALAGRGVQGRINGQLLHLGNHRLVHELGQCSPELEARLQAFEKQG 573 Query: 573 KTTTLLCREGHPQLLVAVADTVRPSSQQAVAELQALGVQVVMLTGDNSHTAQAIAAQTGI 632 KTTT+LC +G PQLLVAVADTVRPSS+QAVAEL+ALGV+V+MLTGDNSHTAQAIAAQTGI Sbjct: 574 KTTTVLCLDGQPQLLVAVADTVRPSSRQAVAELRALGVEVIMLTGDNSHTAQAIAAQTGI 633 Query: 633 ADARGDQLPEDKLKVIEELSGRYGLHSVGMVGDGINDAPALARADIGFAMGAAGTDTALE 692 +DARGDQLPEDKLK IEELS R+G+ VGMVGDGINDAPALARADIGFAMGAAGTDTALE Sbjct: 634 SDARGDQLPEDKLKAIEELSQRHGVRGVGMVGDGINDAPALARADIGFAMGAAGTDTALE 693 Query: 693 TADVALMDDDLRKIPDFIRLSRKAHAVLLQNISIALGIKAVFLVLALVGMSSLWMAVFAD 752 TADVALMDDDLRKIPDFIRLSRKAHAVL+QNISIALGIKAVFL LALVGMSSLWMAVFAD Sbjct: 694 TADVALMDDDLRKIPDFIRLSRKAHAVLVQNISIALGIKAVFLGLALVGMSSLWMAVFAD 753 Query: 753 MGASLIVVFNGLRLVRGVRQRKASA 777 MGASLIVVFNGLRLVRG+RQRKA+A Sbjct: 754 MGASLIVVFNGLRLVRGLRQRKAAA 778 >gi|300310937|ref|YP_003775029.1| heavy metal translocating P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 744 Score = 325 bits (832), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 229/597 (38%), Positives = 338/597 (56%), Gaps = 36/597 (6%) Query: 201 GWIALRNFSLNMNFLMSLAVIGAAAIGQW--------------------PEAAMVIVLFT 240 GW ALR S NM+ L++L A + W +A+VI L Sbjct: 144 GWGALRARSGNMDLLVALGTSAAYGLSLWQWLTLPTMPGHAMAMPHLYFESSAVVITLVL 203 Query: 241 LAEMIEALSLDRARNAIAGLMAMTPDLASLRGADGVWKSVPANTVTVDATVRVAPGERVP 300 L + +E + + +AIA L A+ P+ A +R DG VP V V V + PGERVP Sbjct: 204 LGKWLEGRAKRQTADAIAALNALRPENARVR-RDGQDIEVPLAQVRVGDLVVLRPGERVP 262 Query: 301 LDGVLLSGSTSINQAPITGESIPVQKQAGDPVFAGTINEQGAFEMRVTAVQSDSTLSRIV 360 +DGV+ G + +++A +TGES P KQAGDP+ AG+IN +G M TA+ +++ L+RIV Sbjct: 263 VDGVVREGRSHLDEAMLTGESRPQAKQAGDPLTAGSINAEGVLVMETTAIGAETVLARIV 322 Query: 361 KSVQQAQGQRAPTQRFVDNFARYYIPAVVLMALLVALLPPLLAGAAFQPWLYKALVLLVI 420 + V+QAQ +AP QR VD + ++PAV+L++LL L L+ G Q L A+ ++VI Sbjct: 323 RMVEQAQAAKAPIQRLVDQVSAVFVPAVLLLSLLTLLGWGLVQGNWEQA-LLNAVAVMVI 381 Query: 421 ACPCALVISTPVTIVSALASAAKLGILVKGGVYLEQGRQLRALAVDKTGTLTFGKPRVTD 480 ACPCAL ++TP I++ AA+ GIL+K LE ++ A+A DKTGTLT G PR Sbjct: 382 ACPCALGLATPTAIMAGTGVAARHGILIKDAEALEIAHRVNAVAFDKTGTLTLGHPR--- 438 Query: 481 VLTLQAGADQQ--ALLQLAVSLAARSDHPVSRAIAAQEEIVTLEVSEFA---ALAGRGVQ 535 +L L+A Q LL LA +L A S+HP+ RA+ + ++AG G++ Sbjct: 439 LLELEATPSTQPDELLALAAALQAHSEHPLGRAVREAAAQSAQAARQAEQVRSVAGLGIE 498 Query: 536 GRIAGQLFHLGNHRLIHELGQCSPALEARLQAFEKQGKTTTLLCREGHPQL----LVAVA 591 G + G+ LG+ R + +L +PAL+AR + + QG+T + L R + L+A Sbjct: 499 GVVEGRQLMLGSSRWMQQLQAHAPALQARAEQLQAQGRTLSWLARRNDSGVEVLGLLAFG 558 Query: 592 DTVRPSSQQAVAELQALGVQVVMLTGDNSHTAQAIAAQTGIADARGDQLPEDKLKVIEEL 651 D ++P +Q A+A L +GV+ ML+GDN AQ +A++ GI + R + LP DK + + L Sbjct: 559 DQIKPGAQAAIATLHRMGVRSAMLSGDNLGAAQQVASELGIQEVRAEVLPADKAEAVTAL 618 Query: 652 SGRYGLHSVGMVGDGINDAPALARADIGFAMGAAGTDTALETADVALMDDDLRKIPDFIR 711 + G V MVGDG+NDAPALA AD+G AM + GTD A++ A V LM D + D I Sbjct: 619 R-QGGAQVVAMVGDGVNDAPALAAADVGMAM-STGTDVAMQAAGVTLMHGDPGLVADAID 676 Query: 712 LSRKAHAVLLQNISIALGIKAVFLVLALVGMSSLWMAVFADMGASLIVVFNGLRLVR 768 +SR+ +A + QN+ A V + LA +G+ + +A A +S+ VV N L L R Sbjct: 677 ISRRTYAKIRQNLFWAFIYNLVGIPLAALGLLNPMLAGAAMAFSSVSVVSNALLLRR 733 >gi|300311699|ref|YP_003775791.1| cation transport P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 734 Score = 216 bits (550), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 188/590 (31%), Positives = 320/590 (54%), Gaps = 29/590 (4%) Query: 187 LAAILLGGLGTLKKGWIALRNFSLNMNFLMSLAVIGAAAIGQWPEAAMVIVLFTLAEMIE 246 LA L+ + L +A+R + ++ + +++ GA + + AA++ ++F +E Sbjct: 12 LAGPLVVLMAVLADTAMAMRRGGMKLDLIALVSIAGAVLLREDLVAAVIALMFAGGRALE 71 Query: 247 ALSLDRARNAIAGLMAMTPDLASLRGADGVWKSVPANTVTVDATVRVAPGERVPLDGVLL 306 +++ RA+ ++ L+ P +A+ + + ++ N V + V PGE VP+DG LL Sbjct: 72 SVAQRRAQQEMSALLGKAPHVANRYEGERI-VTIGLNLVRPGDRLLVRPGEPVPVDGRLL 130 Query: 307 SGSTSINQAPITGESIPVQKQAGDPVFAGTINEQGAFEMRVTAVQSDSTLSRIVKSVQQA 366 G ++++ +TGES+PV G + +G +N AF++ T+ ST +++++ VQ A Sbjct: 131 -GPAVVDESMLTGESLPVSHPQGATLASGCVNAGNAFDLLATSTDQSSTFAQVLRLVQAA 189 Query: 367 QGQRAPTQRFVDNFARYYIPAVVLMALLVALLPPLLAGAAFQPWLYKALVLLVIACPCAL 426 Q +AP R D +A +IP V+ MA L LL P +AL ++V+A PC L Sbjct: 190 QASQAPAARMADRYALLFIPLVLAMAALSWLL-------TGDP--RRALAVVVVATPCPL 240 Query: 427 VISTPVTIVSALASAAKLGILVKGGVYLEQGRQLRALAVDKTGTLTFGKPRVTDVLTLQA 486 +++ PV IV A++ A+ G+L+K G LE+ Q+R L DKTGTLT GK R+ +++T + Sbjct: 241 ILAVPVAIVCAMSRCAQRGVLIKHGGALEKLAQVRTLFFDKTGTLTAGKARLMNMVTTPS 300 Query: 487 -GADQQALLQLAVSLAARSDHPVSRAI--AAQEEIVTLEV-SEFAALAGRGVQGRIAGQL 542 AD+ LL+LA SL S+H +++A+ AA E + L + + G G+ GR+ G+L Sbjct: 301 IQADE--LLRLAASLEQMSNHVIAQAVVSAAIERALVLSIPDQVQEQPGAGLSGRVDGKL 358 Query: 543 FHLGNHRLIHELGQCSPALEARLQAFEKQGKTTTLLCREGHPQLLVAVADTVRPSSQQAV 602 +G + + P + +G + +G ++ +AD +R + +A+ Sbjct: 359 VRVGAMQYVIGPSAAPPWTSGLRDRLKYEGGAGVCVAVDGQLCGVLYLADDIRLDTPRAL 418 Query: 603 AELQALGVQ-VVMLTGDNSHTAQAIAAQTGIADARGDQLPEDKLKVIEELSGRYGLHSVG 661 +L+ALG + +VMLTGD A I + G D +Q P KL I++ S R G+ Sbjct: 419 RQLRALGAKRIVMLTGDRRDVAMTIGSSLGFDDVMPEQSPASKLAAIKQAS-REGVTM-- 475 Query: 662 MVGDGINDAPALARADIGFAMGAAGTDTALETADVALMDDDLRKIPDFIRLSRKAHAVLL 721 MVGDGINDAPALA ADIG AMGA G A E+A V L+ D L ++ +R++++A + L Sbjct: 476 MVGDGINDAPALAAADIGVAMGARGAAAAAESAQVVLLVDRLDRLAFAVRMAQQARKIAL 535 Query: 722 QNISIALGIKAVFLVLALVG----MSSLWMAVFADMGASLIVVFNGLRLV 767 Q++ +G+ ++ A G ++ + F D+ V+ N LR++ Sbjct: 536 QSVVAGMGLSGCAMLAAAFGYLPPVAGAILQEFIDVA----VILNALRVL 581 >gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 839 Score = 186 bits (472), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 155/495 (31%), Positives = 245/495 (49%), Gaps = 34/495 (6%) Query: 295 PGERVPLDGVLLSGSTSINQAPITGESIPVQKQAGDPVFAGTINEQGAFEMRVTAVQSDS 354 PG+ + D LL G+ + A ++GES P Q G G +N +RV +S Sbjct: 352 PGDTIAADACLLEGAGEFDLALLSGESRPQSFQIGQEAPGGAVNLSQPVFLRVVRATGES 411 Query: 355 TLSRIVKSVQQA-QGQRAPTQRFVDNFARYYIPAVVLMALLVALLPPLLAGAAFQPW--- 410 TL+ + + +QA QG+ A Q + D A ++ VALL LLAGA F W Sbjct: 412 TLAALTRLAEQAGQGKPALAQ-WADVVASRFV---------VALL--LLAGATFLAWQLI 459 Query: 411 -----LYKALVLLVIACPCALVISTPVTIVSALASAAKLGILVKGGVYLEQGRQLRALAV 465 A+ +LV++CPCAL ++TP + +A + G L+ G LE ++ + Sbjct: 460 DPTRAWSTAIAVLVVSCPCALSLATPSALAAATDRLLRAGTLIVRGNVLETLQRADTIVF 519 Query: 466 DKTGTLTFGKPRVTDVLTLQAGADQQALLQLAVSLAARSDHPVSRAI---AAQEEIVTLE 522 DKTGTLT G+P++T L + D Q L +A ++ S HP+++A+ A+ ++ LE Sbjct: 520 DKTGTLTQGRPQLT---ALWSDVDCQRSLAIAAAMERGSLHPLAKALVEEGARRQVDALE 576 Query: 523 VSEFAALAGRGVQGRIAGQLFHLGNHRLIHELGQCSPALEARLQAFEKQGKTTTLLCREG 582 V + ++ G G+QG I G L+ +G+ + G AL L G + L Sbjct: 577 VEQLTSVTGAGMQGMIEGDLYRIGSRSFVA--GLAGTALPPVLLQSAASGAGSVYLGSSD 634 Query: 583 HPQLLVAVADTVRPSSQQAVAELQALGVQVVMLTGDNSHTAQAIAAQTGIADARGDQLPE 642 +AD +R + VA +ALG++ ++L+GD +AA GI++ + P+ Sbjct: 635 GWLARFDLADALRTDAVATVAAFRALGLRTILLSGDQPEVCAEVAAAAGISEVQAACTPQ 694 Query: 643 DKLKVIEELSGRYGLHSVGMVGDGINDAPALARADIGFAMGAAGTDTALETADVALMDDD 702 KL + L R G V +VGDGINDA L D+ FAMG G A +AD +M D Sbjct: 695 GKLDYVRNLQ-RDG-AVVAIVGDGINDAAMLRAGDVSFAMG-KGAALAQVSADAVIMSDR 751 Query: 703 LRKIPDFIRLSRKAHAVLLQNISIALGIKAVFLVLALVGMSSLWMAVFADMGASLIVVFN 762 L+ + D ++++ ++ QN+ A + + A G+ WM+ +SL+VV N Sbjct: 752 LQAVADCAAMAQRTMHIVRQNLVWAATYNFLAIPAAAFGLLDPWMSAVGMSLSSLLVVGN 811 Query: 763 GLRLVRGVRQRKASA 777 LRL R RQ +++A Sbjct: 812 ALRLSR--RQVRSAA 824 >gi|300313072|ref|YP_003777164.1| high-affinity K+ transport system ATPase [Herbaspirillum seropedicae SmR1] Length = 730 Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 143/543 (26%), Positives = 248/543 (45%), Gaps = 74/543 (13%) Query: 291 VRVAPGERVPLDGVLLSGSTSINQAPITGESIPVQKQAG---DPVFAGTINEQGAFEMRV 347 V + G+ VP D ++ G +++++ ITGES PV +++G V GT +RV Sbjct: 162 VLIEAGDTVPADAEVIEGVATVDESAITGESAPVIRESGGDFSAVTGGTRVLSDWIVVRV 221 Query: 348 TAVQSDSTLSRIVKSVQQAQGQRAPTQRFVDNFARYYIPAVVLMALLVALLP----PLLA 403 + ++ L R++ V+ A+ Q+ P + + +V + + V LLP + A Sbjct: 222 SVNPGEAFLDRMIAMVEGARRQKTPNELALTLLLVAL--TLVFLLVTVTLLPFSIFSVNA 279 Query: 404 GAAFQPWLYKALV-LLVIACPCALVISTPVTIVSALASAAKLGILVKGGVYLEQGRQLRA 462 + P AL+ LLV P + V+ ++ + ++ G +E + Sbjct: 280 AGSGSPVSVTALIALLVCLIPTTIGGLLSAIGVAGMSRMMQANVIATSGRAVEAAGDVDV 339 Query: 463 LAVDKTGTLTFGKPRVTDVLTLQAGADQQALLQLAVSLAARSDH-PVSRAIAA-QEEIVT 520 L +DKTGT+T G R G ++ L +A LA+ +D P R+I + Sbjct: 340 LLLDKTGTITLGN-RQAAAFMPAPGVTERELADVA-QLASLADETPEGRSIVVLAKNRFN 397 Query: 521 LEVSEFAALAGRGV----QGRIAGQLFHLGNHRL-------IHELGQCS----PA-LEAR 564 L E A L + Q R++G LG+ R+ I +L + + PA +E+ Sbjct: 398 LREREMANLGAEFIPFSAQTRVSG--IDLGHRRIRKGAADAIRKLTRAADQRLPAQVESD 455 Query: 565 LQAFEKQGKTTTL---------LCREGHPQLL---VAVADTVRPSSQQAVAELQALGVQV 612 +++ ++G T + + +G P + V + D V+ ++ EL+ +G++ Sbjct: 456 IESIARRGGTPLVVIEWHAEAAMINQGAPIRILGTVELKDIVKGGIKERFGELRRMGIKT 515 Query: 613 VMLTGDNSHTAQAIAAQTGIADARGDQLPEDKLKVIEELSGRYGLHSVGMVGDGINDAPA 672 VM+TGDN TA AIAA+ G+ D + PE KL +I + L V M GDG NDAPA Sbjct: 516 VMITGDNRLTAAAIAAEAGVDDFLAEATPEQKLALIRQHQAEGKL--VAMTGDGTNDAPA 573 Query: 673 LARADIGFAMGAAGTDTALETADVALMDDDLRKIPDFIRLSRKAHAVL--LQNISIALGI 730 LA+AD+ AM +GT A E ++ +D + K+ + + + ++ L SIA + Sbjct: 574 LAQADVAVAMN-SGTQAAKEAGNMVDLDSNPTKLIEIVEIGKQMLMTRGSLTTFSIANDV 632 Query: 731 KAVFLVLALVGMSSLWMAVFADMGASLI-------------VVFNGLRLV-------RGV 770 F ++ ++++ + +GA + V+FN L +V RGV Sbjct: 633 AKYFAII-----PAMFVGSYPQLGALNVMHLASPDSAIMSAVIFNALVIVALIPLALRGV 687 Query: 771 RQR 773 R R Sbjct: 688 RYR 690 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,950,393 Number of extensions: 75622 Number of successful extensions: 385 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 360 Number of HSP's successfully gapped: 8 Length of query: 777 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 684 Effective length of database: 1,179,515 Effective search space: 806788260 Effective search space used: 806788260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)