BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1483.p
         (141 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310932|ref|YP_003775024.1| hypothetical protein Hsero_1603...   115   2e-27

>gi|300310932|ref|YP_003775024.1| hypothetical protein Hsero_1603
           [Herbaspirillum seropedicae SmR1]
          Length = 157

 Score =  115 bits (287), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/146 (59%), Positives = 97/146 (66%), Gaps = 5/146 (3%)

Query: 1   MMLRAKILLLWLLALAIPVQGFAAVLQACAPAMQQAVQAHQMPHHPLTMPAQAHQHQHEH 60
           +MLRAK+ LL LLALAIPVQGFAA LQACAPA+Q + + H            A      H
Sbjct: 12  IMLRAKLFLLCLLALAIPVQGFAAALQACAPAVQSSARHHAPSAPAAPAAHSAGMQHEHH 71

Query: 61  APHAGHDMSTPAMADQDA-----PHSQHHADASCSFCAACTVGAILPLALGGVPAPDLPS 115
           AP   H  +   +ADQ A     P   HH  ASCSFCAACTVG +LPLAL   PAPDLPS
Sbjct: 72  APQGHHGAAAQTVADQSAETAHQPDPPHHTQASCSFCAACTVGGLLPLALSAPPAPDLPS 131

Query: 116 REFLAQPTAGFVGYLPENPDRPPALA 141
           REF+A P +GFVGYLPENPDRPPALA
Sbjct: 132 REFIALPASGFVGYLPENPDRPPALA 157


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.132    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 403,881
Number of extensions: 14333
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 65
Effective length of database: 1,260,010
Effective search space: 81900650
Effective search space used: 81900650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)