BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1482.p
         (461 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310931|ref|YP_003775023.1| copper tolerance protein [Herba...   728   0.0  
gi|300313718|ref|YP_003777810.1| cobalt-zinc-cadmium resistance ...    56   6e-09

>gi|300310931|ref|YP_003775023.1| copper tolerance protein
           [Herbaspirillum seropedicae SmR1]
          Length = 461

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/461 (86%), Positives = 432/461 (93%)

Query: 1   MIPHVSRPLRAVAVAACTLLAGCAQLSPDGGFDQVEQTSRQRLGQAPAWNRTPQQSQASA 60
           MIPHVSRPLRA AVAAC LLAGCAQLSPDGGF QVEQ S  RLGQAPAWNRTPQQ+QAS+
Sbjct: 1   MIPHVSRPLRAAAVAACALLAGCAQLSPDGGFGQVEQASSTRLGQAPAWNRTPQQTQASS 60

Query: 61  QRVRQLLQADAASPGRLASADDAVQIALINNPELQAEFAGLGVAEADLVQAGRLPNPGFS 120
           + VRQLL   A S  RLASADDAVQIALINNP+LQA+FAGLGVAEADLVQAGRLPNPGFS
Sbjct: 61  EHVRQLLHDPANSTPRLASADDAVQIALINNPDLQADFAGLGVAEADLVQAGRLPNPGFS 120

Query: 121 FKRSHAGDDLKIERSLSLGLMRLITLPAASRIEQRRFEQVRLSLAARVLALAAQTRQAYY 180
           FKRSHAGDDLKIERSLSLGLMRL+TLPAASRIEQRRFEQVRLSLA+RVL++AAQTRQAYY
Sbjct: 121 FKRSHAGDDLKIERSLSLGLMRLLTLPAASRIEQRRFEQVRLSLASRVLSVAAQTRQAYY 180

Query: 181 KAVAAQQGLRYQQQVADAAEAAHELAAQMARLGNISKLDAAREQFFYGQAQASLQQAQRL 240
           +AVAAQQGL+YQ+QVADAAEAAH LAAQMARLGNIS+LD+AREQFFYGQAQ SLQQA+RL
Sbjct: 181 QAVAAQQGLQYQKQVADAAEAAHALAAQMARLGNISQLDSAREQFFYGQAQTSLQQARRL 240

Query: 241 AAQDKESLARLLGLAPDFALPAQLPALPRQLDELNDIEQQALQQRLDVQAARTELEGLQA 300
           AAQ KESLARLLGLAPDF+LPAQLPALPRQL+ ++DIEQQALQQRLDV+AARTELEGLQ 
Sbjct: 241 AAQHKESLARLLGLAPDFSLPAQLPALPRQLEAVDDIEQQALQQRLDVEAARTELEGLQT 300

Query: 301 SLGLTRATRWINVLDLGAVRTSESGKPPEIGYEISIEIPLFDWGEARVAKAESIYLQGAH 360
           SLGLTRATR +NVLDLGA+RT+ESGKP E GYEIS+EIPLFDWGEARVAKAE+IYLQGAH
Sbjct: 301 SLGLTRATRLVNVLDLGALRTTESGKPVENGYEISLEIPLFDWGEARVAKAEAIYLQGAH 360

Query: 361 RLAASVLDARAQARLAWRERQDAYALARRYQDQLLPLRQRIAEENLLRYNGMLISVFALL 420
           +LAA+VLDARAQARLAWRERQDAY LARRYQD+ LPLRQRIA+EN+LRYNGML+SVF LL
Sbjct: 361 KLAAAVLDARAQARLAWRERQDAYTLARRYQDEWLPLRQRIADENVLRYNGMLVSVFILL 420

Query: 421 ADAREQATTVNTAIDAQRDFWIAEAGLQQALGGRPQEGKQP 461
           ADAREQA TVN AI+AQRDFWIA+A LQ ALGGRP +GKQP
Sbjct: 421 ADAREQAATVNAAIEAQRDFWIADASLQLALGGRPTQGKQP 461


>gi|300313718|ref|YP_003777810.1| cobalt-zinc-cadmium resistance
           cation efflux system outer membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 102/235 (43%), Gaps = 28/235 (11%)

Query: 46  APAWNRTPQQSQASAQRVRQLLQADAASPGRLASADDAVQIALINNPELQAEFAGLGVAE 105
           APA    PQ   AS+           AS  RL S   A+ +AL  N  L A    +   E
Sbjct: 24  APANTEHPQPHTASS----------LASEPRLLSLPAAISLALEQNKTLAAARKEIEAVE 73

Query: 106 ADLVQAGRLPNPGFS-----FKRSHAGDDLKIERSLSLGLMRLITLPAASRIE--QRRFE 158
           A ++QAG  PNP FS     F++S      ++ + + LG  R      ++RIE  QR  E
Sbjct: 74  ATIIQAGARPNPEFSALMEDFRKSSRTTTYQLTQPIELGGKR------SARIEAAQRTRE 127

Query: 159 QVRLSLAARVLALAAQTRQAYYKAVAAQQGLRYQQQVADAAEAAHELAAQMARLGNISKL 218
              L  AA+   + A    AYY+ + A +  R  +++   A+ + ++ ++    G IS +
Sbjct: 128 MALLDYAAKRTEIRAGVIAAYYEVMVAMERQRLAKELLGLAKTSADMTSRRVTAGKISPV 187

Query: 219 DAAREQFFYGQAQASLQQAQRLAAQDKESLARLLG-LAPDFALP----AQLPALP 268
           +  + +     AQ  L QA       ++ LA   G +   F L       LPALP
Sbjct: 188 EQTKARVAESSAQLELHQADSDVLLAQKKLATFWGSVGNAFQLTDGGVESLPALP 242


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,159,141
Number of extensions: 42895
Number of successful extensions: 243
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 3
Length of query: 461
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 373
Effective length of database: 1,203,190
Effective search space: 448789870
Effective search space used: 448789870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)