BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1481.p
         (462 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310930|ref|YP_003775022.1| multicopper oxidase [Herbaspiri...   848   0.0  

>gi|300310930|ref|YP_003775022.1| multicopper oxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 462

 Score =  848 bits (2190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/465 (89%), Positives = 433/465 (93%), Gaps = 6/465 (1%)

Query: 1   MNPSDKLRRHFLQGAALAVSSAAVSRAGAASLPEAALQTSPATQPPLPPATGRPYQPVVT 60
           M+  DK RR FLQGAALAV++ AVSRAGAA+LPEA LQ SPATQPPL PA GRPYQPVVT
Sbjct: 1   MSTPDKQRRSFLQGAALAVTAGAVSRAGAAALPEAPLQASPATQPPLHPANGRPYQPVVT 60

Query: 61  LNGWTLPWRMKNGVKEFHLVAEPVVREIAPGMKANLWGYNGQSPGPTIEVVEGDRVRIFV 120
           LNGW+LPWRM NGVKEFHLVAEPVVREIAPGMKA LWGYNGQSPGPTIEVVEGDRVRIFV
Sbjct: 61  LNGWSLPWRMNNGVKEFHLVAEPVVREIAPGMKARLWGYNGQSPGPTIEVVEGDRVRIFV 120

Query: 121 TNKLPEATSVHWHGQRLPNGMDGVSGLTQPAIPPGKTYVYEFTARRAGSFMYHPHADEMV 180
           TNKLPEATSVHWHGQRLPNGMDGVSGLTQPAIPPGKTYVYEFTARRAG+FMYHPHADEMV
Sbjct: 121 TNKLPEATSVHWHGQRLPNGMDGVSGLTQPAIPPGKTYVYEFTARRAGTFMYHPHADEMV 180

Query: 181 QMAMGMMGFWVTHPKDPGFMRVDRDFVFLMNAYDIAPGATVPKVSTMLDFNLWTWNSRAF 240
           QMAMGMMGFWVTHPKDPGFMRVDRDFVFLMNAYDIAPGA+VPKVSTMLDFNLWTWNSRAF
Sbjct: 181 QMAMGMMGFWVTHPKDPGFMRVDRDFVFLMNAYDIAPGASVPKVSTMLDFNLWTWNSRAF 240

Query: 241 PGIDPLVVRHNDRVRIRVGNLTMTNHPLHLHGHEFVVTGTDGGWVPPAARWPEVTTDIAV 300
           PGIDPLVVR NDRVRIRVGNLTMTNHPLHLHGHEF VTGTDGGWVPPAARWPEVTTDIAV
Sbjct: 241 PGIDPLVVRQNDRVRIRVGNLTMTNHPLHLHGHEFSVTGTDGGWVPPAARWPEVTTDIAV 300

Query: 301 GQMRAIEFDATEEGDWALHCHKAHHTMNAMGHDLPTMIGVDQSRVVEKISKLVPDYMAMG 360
           GQMRAIEFDATEEGDWALHCHKAHHTMNAMGHDLPTMIGVDQS+V++KI++L+PDYMAMG
Sbjct: 301 GQMRAIEFDATEEGDWALHCHKAHHTMNAMGHDLPTMIGVDQSKVLDKITRLIPDYMAMG 360

Query: 361 DKGGSMGEMEMPLPENTLPMMTGRGPYGPIEMGGMFSTLKVRRHLARDDYRDPGWYRAPA 420
           DKGGSMGEMEMPLPENTLPMMTGRGPYGPIEMGGMFST+KVR+ LARDDYRDPGWYRAPA
Sbjct: 361 DKGGSMGEMEMPLPENTLPMMTGRGPYGPIEMGGMFSTVKVRKQLARDDYRDPGWYRAPA 420

Query: 421 GTVAHEWKGELPGPRRAPAGATGQPGPATLDVVKP---GGHQGHH 462
           GTVA  W G  P   RAP    G+P   TL+VVKP   GGHQGHH
Sbjct: 421 GTVARPWNGPAPSAARAPDRDDGKP---TLEVVKPGMQGGHQGHH 462


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,607,808
Number of extensions: 71846
Number of successful extensions: 243
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 373
Effective length of database: 1,198,455
Effective search space: 447023715
Effective search space used: 447023715
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)