BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1477.p
         (174 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310920|ref|YP_003775012.1| integral membrane protein [Herb...   287   4e-79

>gi|300310920|ref|YP_003775012.1| integral membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score =  287 bits (734), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 159/178 (89%), Positives = 164/178 (92%), Gaps = 4/178 (2%)

Query: 1   MLRSESLFGKRETNSTNSPFSSAGSSVS--SSTGGNVTSVNKAAPYPSSVS--HAAPAAT 56
           MLRSESLFGKRET STNSPFSSA S+ S  + TGGNVTSVNK A YPSSVS    A AA 
Sbjct: 1   MLRSESLFGKRETTSTNSPFSSASSNGSTSTPTGGNVTSVNKPAQYPSSVSTPAPAQAAA 60

Query: 57  EESGSKLTVGPNIKVKGEIEDCDTLVVEGKVQATINCRVVQIAERGAFKGSAEIDLAEIR 116
           EESGSKLTVGPNIKVKGEIEDCDTLVVEGKVQATINCRVVQIAERGAFKGSAEIDLAEIR
Sbjct: 61  EESGSKLTVGPNIKVKGEIEDCDTLVVEGKVQATINCRVVQIAERGAFKGSAEIDLAEIR 120

Query: 117 GEFDGDLTVRQKLVIYSSGKVTGKIRYGKLVIEEGGQLAGDLQVGGGHEQKDLLQKTA 174
           GEFDG+LTVRQKLVIY+SGKVTGKIRYGKLVIEEGGQLAGDLQVGGGHEQK+LLQKTA
Sbjct: 121 GEFDGELTVRQKLVIYASGKVTGKIRYGKLVIEEGGQLAGDLQVGGGHEQKELLQKTA 178


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.308    0.128    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 447,835
Number of extensions: 16518
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,245,805
Effective search space: 118351475
Effective search space used: 118351475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 127 (53.5 bits)