BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1471.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310909|ref|YP_003775001.1| serine O-acetyltransferase [Her...   585   e-168
gi|300311650|ref|YP_003775742.1| serine O-acetyltransferase [Her...   305   4e-84
gi|300311189|ref|YP_003775281.1| serine O-acetyltransferase [Her...   137   1e-33

>gi|300310909|ref|YP_003775001.1| serine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  585 bits (1508), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 287/311 (92%), Positives = 299/311 (96%)

Query: 1   MDTSHTPELNALAESAGLGLSTVVAGLRTSREVTNKIRYRGEIRELPSREAMQKLLHHLQ 60
           MDTS+TPEL+AL ++AGLGLS VVAGLRTSREVTNKIRYRGEIRELPSREAM KLL HLQ
Sbjct: 1   MDTSNTPELSALVDTAGLGLSAVVAGLRTSREVTNKIRYRGEIRELPSREAMHKLLQHLQ 60

Query: 61  AALFPTHYGHTDLSDETIDYFVGSQLNAALAILREQVRRSLYFSSEIHEDALLRERATVI 120
           AALFPTHYGHTDLSDETIDYFVGSQLN  L+IL+EQVRRSLYFSS++ EDA LRE+A  I
Sbjct: 61  AALFPTHYGHTDLSDETIDYFVGSQLNTGLSILKEQVRRSLYFSSDLQEDAPLREQAARI 120

Query: 121 TRDFAHQLPAVRDILVSDIQAAYHGDPAASSISEILLCYPGTTAIIYHRLAHALHQLGAP 180
           TRDFAHQLPAVRD+LVSDIQAAYHGDPAASSISEILLCYPGTTAIIYHRLAHALHQLGAP
Sbjct: 121 TRDFAHQLPAVRDVLVSDIQAAYHGDPAASSISEILLCYPGTTAIIYHRLAHALHQLGAP 180

Query: 181 LLARLIADIAHSATGIDIHPAAQIGPSFFIDHGTGVVIGETTIIGRNVRLYQAVTLGAKR 240
           LLARLIADIAHSATGIDIHPAAQIGPSFFIDHGTGVVIGETTIIGRNVRLYQAVTLGAKR
Sbjct: 181 LLARLIADIAHSATGIDIHPAAQIGPSFFIDHGTGVVIGETTIIGRNVRLYQAVTLGAKR 240

Query: 241 FPQEPDGSLVKGIARHPIVEDDVVVYAGATLLGRITIGQGSVIGGNVWLTHSVPPGSNIS 300
           FPQEPDGSLVKGI RHPIVEDDVVVYAGATLLGRITIG+GSVIGGNVWLTHSVP GSN+S
Sbjct: 241 FPQEPDGSLVKGIPRHPIVEDDVVVYAGATLLGRITIGRGSVIGGNVWLTHSVPAGSNVS 300

Query: 301 QAEMLSDCRQP 311
           QAEMLSDCRQP
Sbjct: 301 QAEMLSDCRQP 311


>gi|300311650|ref|YP_003775742.1| serine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  305 bits (780), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 159/267 (59%), Positives = 195/267 (73%), Gaps = 2/267 (0%)

Query: 44  RELPSREAMQKLLHHLQAALFPTHYGHTDLSDETIDYFVGSQLNAALAILREQVRRSLYF 103
           RE PSR+A+  ++  L+  LFP   G  DL  E+ ++ V   L+AAL  L  QVR  L +
Sbjct: 33  REFPSRDALDGIVTTLKGVLFPMRLGPPDLRQESENFHVAHALDAALHALLGQVRLELKY 92

Query: 104 SSEI--HEDALLRERATVITRDFAHQLPAVRDILVSDIQAAYHGDPAASSISEILLCYPG 161
           S+ +       L + A  ITR F   LP +R  L +D+ AAY GDPAA S+ E+LLCYPG
Sbjct: 93  SAGLSGRPTPNLEQDAISITRAFGASLPQIRSQLDTDVLAAYQGDPAARSVDEVLLCYPG 152

Query: 162 TTAIIYHRLAHALHQLGAPLLARLIADIAHSATGIDIHPAAQIGPSFFIDHGTGVVIGET 221
             A+I++RLAH L+QLG PLLAR+IA++AH+ATGIDIHP AQIG  FFIDHGTGVVIGET
Sbjct: 153 ALAMIHYRLAHRLYQLGLPLLARIIAELAHAATGIDIHPGAQIGTGFFIDHGTGVVIGET 212

Query: 222 TIIGRNVRLYQAVTLGAKRFPQEPDGSLVKGIARHPIVEDDVVVYAGATLLGRITIGQGS 281
            +IG NVR+YQAVTLGAKRFP + DG L KG ARHPIVEDDVV+YAGAT+LGRI +G+G+
Sbjct: 213 AVIGNNVRIYQAVTLGAKRFPTDADGKLEKGRARHPIVEDDVVIYAGATILGRIRLGRGA 272

Query: 282 VIGGNVWLTHSVPPGSNISQAEMLSDC 308
           VIGGNVWLTH VP G++ISQA    D 
Sbjct: 273 VIGGNVWLTHDVPAGAHISQAASREDS 299


>gi|300311189|ref|YP_003775281.1| serine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 250

 Score =  137 bits (346), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/163 (46%), Positives = 94/163 (57%), Gaps = 8/163 (4%)

Query: 135 LVSDIQAAYHGDPAASSISEILLCYPGTTAIIYHRLAHALHQLGAPLLARLIADIAHSAT 194
           L  DI +    DPAA +  E+L CYPG  A+I HR A A  Q     L R I+ +    T
Sbjct: 5   LREDIASIRARDPAARNSWEVLTCYPGLHALILHRWAKACWQAQLKWLGRFISQLGRMLT 64

Query: 195 GIDIHPAAQIGPSFFIDHGTGVVIGETTIIGRNVRLYQAVTLGAKRFPQEPDGSLVKGIA 254
           GI+IHP A IG   FIDHG GVVIGET I+G +  +YQ VTLG          SLVKG  
Sbjct: 65  GIEIHPGATIGRRVFIDHGMGVVIGETAIVGDDSTIYQGVTLGGT--------SLVKGAK 116

Query: 255 RHPIVEDDVVVYAGATLLGRITIGQGSVIGGNVWLTHSVPPGS 297
           RHP +   V++ AGA +LG  T+G G+ +G N  +T  VP G+
Sbjct: 117 RHPTLGRGVIIGAGAKVLGGFTVGDGAKVGSNAVVTKEVPAGT 159


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,044,146
Number of extensions: 46656
Number of successful extensions: 155
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 3
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)