BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1469.p
         (382 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310907|ref|YP_003774999.1| major facilitator superfamily p...   619   e-179

>gi|300310907|ref|YP_003774999.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 383

 Score =  619 bits (1597), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 342/374 (91%), Positives = 354/374 (94%)

Query: 1   MSTPDLRQADLDSRHAALSLSAALPCDIVLYLLLPMYADQFHVSLAEAGVLLAANRLVRI 60
           M+TPDLRQADL SRHAA+SLSAALPCDIVLYLLLPMYADQFH+SLAEAGVLLAANRLVRI
Sbjct: 1   MTTPDLRQADLHSRHAAMSLSAALPCDIVLYLLLPMYADQFHISLAEAGVLLAANRLVRI 60

Query: 61  AGYRWVASFYARRGDRPTCLMAVCTAVVCALGYTVASGFWALLPLRLLWGMAFAGLNLST 120
           AGYRWVA FYA+RGDRPTC +AVC A+VCALGYT ASGFWALLPLRLLWGMAFAGLNLST
Sbjct: 61  AGYRWVARFYAQRGDRPTCTLAVCAAIVCALGYTAASGFWALLPLRLLWGMAFAGLNLST 120

Query: 121 QSMSTSTAQGAARRSGRSRGVIAIGPMLWLPTAALLAAHVGPRMVFGCVAMTALLGLLAA 180
           Q+MSTS  QGAARRSGRSRGVIAIGPMLWLPTAALLA H+GPR+VF  VA TALLGLLAA
Sbjct: 121 QAMSTSNPQGAARRSGRSRGVIAIGPMLWLPTAALLAPHIGPRLVFALVAATALLGLLAA 180

Query: 181 HRLPAHAYAPPQPRRWKLPNALDWWSFLEGLTLDGLFIVGLAYMSKQSFGADGELVAGVL 240
            RLP HAYAPPQPRRWKLPNALDWWSFLEGLTLDGLFIVGLAYMSKQSFGADGELVAGVL
Sbjct: 181 RRLPQHAYAPPQPRRWKLPNALDWWSFLEGLTLDGLFIVGLAYMSKQSFGADGELVAGVL 240

Query: 241 MALRYAGEIVLSPLGGWLAERFGAVKVLVTLSLATCVALVGFGGGLLWLFAGLIVILRAL 300
           MALRYAGEIVLSPLGGWLAERFGAVKVLVTLSLATCVALVGFGGGLLWLFAG+IVILRAL
Sbjct: 241 MALRYAGEIVLSPLGGWLAERFGAVKVLVTLSLATCVALVGFGGGLLWLFAGVIVILRAL 300

Query: 301 QLPLLAPIVAARTPPGQRVHALAGRAIWRDIGAGLGPMLAGLLLPVMSSLWLYGLAAAAL 360
           QLPLLAPIVAART P QRVHALAGRAIWRDIGAG+GPMLAGLLLPVMSSLWLY LAA+AL
Sbjct: 301 QLPLLAPIVAARTAPEQRVHALAGRAIWRDIGAGMGPMLAGLLLPVMSSLWLYSLAASAL 360

Query: 361 ALAAIACGREPVVV 374
           ALAAIACG  P  V
Sbjct: 361 ALAAIACGGAPAPV 374


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,027,773
Number of extensions: 38162
Number of successful extensions: 263
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 295
Effective length of database: 1,207,925
Effective search space: 356337875
Effective search space used: 356337875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)