BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1465.p
         (201 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310900|ref|YP_003774992.1| alkylhydroperoxidase [Herbaspir...   400   e-113
gi|300312926|ref|YP_003777018.1| peroxidase-like protein [Herbas...    67   1e-12

>gi|300310900|ref|YP_003774992.1| alkylhydroperoxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 201

 Score =  400 bits (1027), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/201 (96%), Positives = 196/201 (97%)

Query: 1   MSDIIKANGFTNETLEWDAWLDVIQLEEASEDQIKVLEESHPKAKTSDYYLFLAHQPDIL 60
           MSDIIKANGFTNETLEWDAWLDVIQLE AS DQIKVLEESHPKAKTSDYYLFLAHQPDIL
Sbjct: 1   MSDIIKANGFTNETLEWDAWLDVIQLEAASADQIKVLEESHPKAKTSDYYLFLAHQPDIL 60

Query: 61  RQRSAAFNAIMYAPGGLSRAERELGSLVVSRINGCVYCASVHAQRFEQLAKRNDTVRQVF 120
           RQRSAAFNAIMYAPGGL RAERELGSLVVSRINGCVYCASVHAQRFEQLAKRNDTVRQVF
Sbjct: 61  RQRSAAFNAIMYAPGGLPRAERELGSLVVSRINGCVYCASVHAQRFEQLAKRNDTVRQVF 120

Query: 121 DTPYGAGVDAREQAIAKFSAELTETPGQIGAAQIKALYEVGLSELEVLDLIHSVAIFAWA 180
           DTPYGAGVDARE+AIAKFSAELTETPG + AAQIKALY+VGLSELEVLDLIHSVAIFAWA
Sbjct: 121 DTPYGAGVDARERAIAKFSAELTETPGDVSAAQIKALYDVGLSELEVLDLIHSVAIFAWA 180

Query: 181 NRLMLNLGEPVFADGSKAEAK 201
           NRLMLNLGEPVFADGSKAEAK
Sbjct: 181 NRLMLNLGEPVFADGSKAEAK 201


>gi|300312926|ref|YP_003777018.1| peroxidase-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 177

 Score = 66.6 bits (161), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 64/136 (47%)

Query: 48  DYYLFLAHQPDILRQRSAAFNAIMYAPGGLSRAERELGSLVVSRINGCVYCASVHAQRFE 107
           + +L LAH+PD  R   A  +A+M  PG L++AERE+  +  S  N C YC   H     
Sbjct: 21  NVFLVLAHRPDEFRAFFAYHDALMDKPGRLTKAEREMIVVATSNANQCQYCVVAHGAILR 80

Query: 108 QLAKRNDTVRQVFDTPYGAGVDAREQAIAKFSAELTETPGQIGAAQIKALYEVGLSELEV 167
             AK      QV      A +  R++A+  F+ +++ +   +G      L + G  E + 
Sbjct: 81  IRAKDPLLADQVAINYRKADISERQKAMLDFAMKVSASAWAVGEEDFATLRKHGWEEEDA 140

Query: 168 LDLIHSVAIFAWANRL 183
            D+    A F  +NRL
Sbjct: 141 WDMAAIAAFFGMSNRL 156


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 616,356
Number of extensions: 23120
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 2
Length of query: 201
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,236,335
Effective search space: 148360200
Effective search space used: 148360200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)