BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1457.p
         (490 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310892|ref|YP_003774984.1| transmembrane oxidoreductase [H...   945   0.0  

>gi|300310892|ref|YP_003774984.1| transmembrane oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 496

 Score =  945 bits (2443), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/496 (93%), Positives = 480/496 (96%), Gaps = 6/496 (1%)

Query: 1   MQDTEPT------LTTAAAPQGLAALEARLRQDLDWLALPGKAWTPKIERAGVPVIDVAI 54
           MQDTEPT       T AA PQGLAALEARLRQDL WLALPGK+WTP+IER GVPV+DVAI
Sbjct: 1   MQDTEPTPTDATCATYAAPPQGLAALEARLRQDLQWLALPGKSWTPQIEREGVPVLDVAI 60

Query: 55  IGGGQAGMAASVALTHLGIPNVIYDQSPKDFEGPWATTARMETLRSPKTLTGPALGFPAL 114
           IGGGQAGMAASVAL+HLGIPNVIYDQSPKDFEGPWATTARMETLRSPKTLTGPALGFPAL
Sbjct: 61  IGGGQAGMAASVALSHLGIPNVIYDQSPKDFEGPWATTARMETLRSPKTLTGPALGFPAL 120

Query: 115 TFRAWFEAQFGLAAWEALDKIPRLQWMDYLRWFRRVMQLDIRNEHRVLAVQPRADGIVAL 174
           TFRAWFEAQFGLAAWEALDKIPRLQWMDYLRWFRRVMQLDIRNEHRVLAVQPRADGIVAL
Sbjct: 121 TFRAWFEAQFGLAAWEALDKIPRLQWMDYLRWFRRVMQLDIRNEHRVLAVQPRADGIVAL 180

Query: 175 QLQSPAGLSTVLARRVVVATGRDGLGGAYLPPLAGQLPRDRWAHSSDVFDYASLKGKRVG 234
           QLQSP+G +TVLARRVVVATGRDGLGGAYLPPLAGQLPRDRWAHSSD+FDYASLKGKRVG
Sbjct: 181 QLQSPSGAATVLARRVVVATGRDGLGGAYLPPLAGQLPRDRWAHSSDLFDYASLKGKRVG 240

Query: 235 VVGGGSSAMDSAATALEEGAARVDLLIRRKDLPRINKGKGSGNPGLVNGHLHLPDAWKWR 294
           V+GGG+SAMDSAATALEEGAARVD+LIRRKDLPRINKGKGSG+PGLVNGHLHLPD WKWR
Sbjct: 241 VIGGGASAMDSAATALEEGAARVDMLIRRKDLPRINKGKGSGSPGLVNGHLHLPDEWKWR 300

Query: 295 IRHYVNAQQVPPPSGSTRRVSRFANARFLLGTAIESVELQRDGALLLHTNRGPLELDFLF 354
           IRHYVNAQQVPPPSGSTRRVSRFANARFLLGTAIESV++Q DGALLLHTNRGPLELDFLF
Sbjct: 301 IRHYVNAQQVPPPSGSTRRVSRFANARFLLGTAIESVQIQPDGALLLHTNRGPLELDFLF 360

Query: 355 FSTGFKIDWSLRSEFKEIAPHILNWSDRYTPPAGEEDQELADSPYLGPVFEFQQKTPGSL 414
           FSTGFKIDWSLR EF++IAPHILNWSDRYTPPAGEEDQELADSPYLGPVFEFQQKTPGSL
Sbjct: 361 FSTGFKIDWSLRREFRDIAPHILNWSDRYTPPAGEEDQELADSPYLGPVFEFQQKTPGSL 420

Query: 415 PGLERVHCFCYPAAASHGTVSGDIPAISDGAYRLAQGIAALMYSEDVEVHYRNIQSYEEP 474
           PGLERVHCFCYPAAASHGTVSGDIPAISDGAYRLAQGIAALMYSEDVE HYRNIQ+YEEP
Sbjct: 421 PGLERVHCFCYPAAASHGTVSGDIPAISDGAYRLAQGIAALMYSEDVEYHYRNIQAYEEP 480

Query: 475 ELEGDEWTEAPWELPA 490
           ELEGDEWTE+PWELPA
Sbjct: 481 ELEGDEWTESPWELPA 496


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,546,027
Number of extensions: 64378
Number of successful extensions: 167
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 401
Effective length of database: 1,198,455
Effective search space: 480580455
Effective search space used: 480580455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)