BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1454.p (336 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPas... 603 e-174 gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas... 310 1e-85 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 296 2e-81 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 190 1e-49 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 182 2e-47 >gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 336 Score = 603 bits (1556), Expect = e-174, Method: Compositional matrix adjust. Identities = 300/336 (89%), Positives = 320/336 (95%) Query: 1 VIRIEQLHKTYHAGQRDIIALRDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPDSG 60 +IRIEQLHKTY AGQRDIIALRDINLDIAQGE+FGIIGRSGAGKSTLIRTLNVLERPDSG Sbjct: 1 MIRIEQLHKTYRAGQRDIIALRDINLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSG 60 Query: 61 RVLIDGEDITGLGHEALLGLRQRVGMIFQHFNLLNAKTVAQNIDWPLKITGRYSRQQRAA 120 RVLIDGEDITGLGHEALLGLRQRVGM+FQHFNLLNAKTVAQNIDWPLKITGRYSR++RAA Sbjct: 61 RVLIDGEDITGLGHEALLGLRQRVGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAA 120 Query: 121 RVTELLQLVGLEQHRDQYPAQLSGGQKQRVGIARALANTPRLLLCDEATSALDPETTQAI 180 RV ELLQLVGL+ HRDQYP+QLSGGQKQRVGIARALAN PRLLLCDEATSALDPETTQ+I Sbjct: 121 RVDELLQLVGLDAHRDQYPSQLSGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSI 180 Query: 181 LRLLLDINRKLGLTIVLITHEMEVIRSICDRVAVLEHGSVAEQGRVVDIFLRPQHAVTRS 240 LRLLL+INRKLGLTIVLITHEMEVIRSICDRVAVL+ G+VAEQGRVVDIFLRPQHAVTRS Sbjct: 181 LRLLLEINRKLGLTIVLITHEMEVIRSICDRVAVLDGGAVAEQGRVVDIFLRPQHAVTRS 240 Query: 241 LLAESHAWDASDNLYQRRADGTLVRLTYAGEVAAQPILSQLTAATSALATIVRGTVSRIK 300 LL +SHAWDA ++LYQRR DG LVRLTYAG++AAQPILSQLTAATSALATIVRGTVSRIK Sbjct: 241 LLTQSHAWDAGESLYQRRPDGKLVRLTYAGDIAAQPILSQLTAATSALATIVRGTVSRIK 300 Query: 301 DTPYGQLLVEFSGGTEAVGLVLARLRESGIDHEVLA 336 DTPYGQLLVEFSG +A+ VL RL+ S I+HEVLA Sbjct: 301 DTPYGQLLVEFSGDADALAQVLDRLQTSDIEHEVLA 336 >gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 345 Score = 310 bits (794), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 167/325 (51%), Positives = 226/325 (69%), Gaps = 12/325 (3%) Query: 17 DIIALRDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPDSGRVLIDGEDITGLGHEA 76 ++ A+R ++L I +GEIFGIIGRSGAGKSTL+RTLN+L RP SGR+++DG+D+T L Sbjct: 13 NVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLDGQDLTSLSAAQ 72 Query: 77 LLGLRQRVGMIFQHFNLLNAKTVAQNIDWPLKITGRYSRQQRAARVTELLQLVGLEQHRD 136 L R+ +GMIFQHFNLL++++V NI PL++ G+ S+ + AA+V LL+LVGL RD Sbjct: 73 LREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGK-SKAEIAAKVEPLLELVGLTALRD 131 Query: 137 QYPAQLSGGQKQRVGIARALANTPRLLLCDEATSALDPETTQAILRLLLDINRKLGLTIV 196 +YPAQ+SGGQKQRVGIARALAN P++LL DEATSALDPETT++IL LL IN++LGLTIV Sbjct: 132 RYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLRKINKELGLTIV 191 Query: 197 LITHEMEVIRSICDRVAVLEHGSVAEQGRVVDIFLRPQHAVTRSLLAESHAWDASDNLYQ 256 LITH+MEVI+ ICDRVAV+E G V EQG V+D+F +P+H VTR+L+ + A + + Sbjct: 192 LITHQMEVIKQICDRVAVMEAGQVIEQGEVLDVFRQPRHEVTRALIGDVIAHELPKGVLA 251 Query: 257 R------RAD---GT--LVRLTYAGEVAAQPILSQLTAATSALATIVRGTVSRIKDTPYG 305 R RAD GT L R + G QP LS+ + I+ G + I+ +G Sbjct: 252 RLRERLARADAGQGTDHLFRFAFTGNDVDQPHLSEAVRRFNLDFNILHGQIDEIQGQAFG 311 Query: 306 QLLVEFSGGTEAVGLVLARLRESGI 330 L + +G + + + LRE G+ Sbjct: 312 SLAILANGTQDNINQAMQYLREQGV 336 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 296 bits (758), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 168/310 (54%), Positives = 209/310 (67%), Gaps = 7/310 (2%) Query: 9 KTYHAGQRDIIALRDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPDSGRVLIDGED 68 KTY + + AL+DI+L+IA G IFGIIGRSGAGKS+L+RT+N LERP SGRV +D D Sbjct: 46 KTYVSAAGPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVD 105 Query: 69 ITGLGHEALLGLRQRVGMIFQHFNLLNAKTVAQNIDWPLKITGRYSRQQRAARVTELLQL 128 + L L+ LR+R+GMIFQHFNLL AKTV NI PL++ G R Q RV ELL L Sbjct: 106 LATLDETQLVALRRRIGMIFQHFNLLAAKTVFDNIALPLRVAG-VPRAQITQRVHELLAL 164 Query: 129 VGLEQHRDQYPAQLSGGQKQRVGIARALANTPRLLLCDEATSALDPETTQAILRLLLDIN 188 VGL+ D YP +LSGGQKQRVGIARALA+ P +LLCDEATSALDPETTQ+IL+LL DIN Sbjct: 165 VGLQDKADSYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDIN 224 Query: 189 RKLGLTIVLITHEMEVIRSICDRVAVLEHGSVAEQGRVVDIFLRPQHAVTRSLLAE-SHA 247 RKLG+TI+LITHEM VIR I DRV VLE G VAE G V +F +PQHA TR+LLA H Sbjct: 225 RKLGITIILITHEMSVIREIADRVLVLEQGRVAELGEVWQVFGKPQHAATRALLAPLQHG 284 Query: 248 WDAS-DNLYQRRADG----TLVRLTYAGEVAAQPILSQLTAATSALATIVRGTVSRIKDT 302 Q +A +++L + G QP L ++ A +++ V I+ Sbjct: 285 LPQELQQALQPQAPAGRHERVLQLEFHGGDGLQPDLQRIAAVLGGRVRVLQAGVDHIQGH 344 Query: 303 PYGQLLVEFS 312 +GQL++ + Sbjct: 345 THGQLVLAVA 354 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 190 bits (483), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 101/236 (42%), Positives = 149/236 (63%), Gaps = 5/236 (2%) Query: 1 VIRIEQLHKTYHAGQRDIIALRDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPDSG 60 +++I+ LHK++ + + L ++LD+ +G++ IIG+SG+GKSTL+R LN LE+ D+G Sbjct: 4 IVKIKDLHKSFGSNK----VLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAG 59 Query: 61 RVLIDGEDITGLGHEALLGLRQRVGMIFQHFNLLNAKTVAQNIDWPLKITGRYSRQQRAA 120 + + G DI L LR++VG++FQ +NL TV +NI L + S +Q Sbjct: 60 DIQVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKT 119 Query: 121 RVTELLQLVGLEQHRDQYPAQLSGGQKQRVGIARALANTPRLLLCDEATSALDPETTQAI 180 ++LQLVGLE +D YP QLSGGQ QRV IAR+LA P L+L DE TSALDPE T + Sbjct: 120 IAHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEV 179 Query: 181 LRLLLDINRKLGLTIVLITHEMEVIRSICDRVAVLEHGSVAEQGRVVDIFLRPQHA 236 L+++ D+ R G+T+VL+THEM R + D + + G V E G ++F P+ A Sbjct: 180 LKVMEDLARG-GMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTA 234 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 182 bits (463), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 102/243 (41%), Positives = 152/243 (62%), Gaps = 8/243 (3%) Query: 1 VIRIEQLHKTYHAGQRDIIALRDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPDSG 60 +I ++++ K + G+ ++ L+D++L +AQGE+ +IG SG+GKST++R +N LE + G Sbjct: 1 MIEVKRISKCF--GRHEV--LKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERG 56 Query: 61 RVLIDGEDITGLGHEALLGLRQRVGMIFQHFNLLNAKTVAQNI-DWPLKITGRYSRQQRA 119 +LIDG+ + G + + LR RVGM+FQ FNL +TV +N+ + P+ + G +R Q Sbjct: 57 DILIDGQRVDRDGPD-IHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNG-LARAQAR 114 Query: 120 ARVTELLQLVGLEQHRDQYPAQLSGGQKQRVGIARALANTPRLLLCDEATSALDPETTQA 179 + LL VGL D YPAQLSGGQ+QRV IAR+LA P +L DE TSALDPE Sbjct: 115 SEAMSLLDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGE 174 Query: 180 ILRLLLDINRKLGLTIVLITHEMEVIRSICDRVAVLEHGSVAEQGRVVDIFLRPQHAVTR 239 +L ++ + G+T++++THEM R + DRV L GS+ E G + PQHA T+ Sbjct: 175 VLAVMRTLAAD-GMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQ 233 Query: 240 SLL 242 L Sbjct: 234 DFL 236 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,012,459 Number of extensions: 41852 Number of successful extensions: 567 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 344 Number of HSP's successfully gapped: 147 Length of query: 336 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 250 Effective length of database: 1,212,660 Effective search space: 303165000 Effective search space used: 303165000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)