BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1452.p (263 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310887|ref|YP_003774979.1| metal ion ABC transporter perip... 504 e-144 gi|300310325|ref|YP_003774417.1| metal ion ABC transporter perip... 211 4e-56 gi|300314030|ref|YP_003778122.1| metal ion ABC transporter perip... 197 5e-52 gi|300311120|ref|YP_003775212.1| metal ion ABC transporter perip... 185 3e-48 gi|300311637|ref|YP_003775729.1| metal ion ABC transporter perip... 122 3e-29 >gi|300310887|ref|YP_003774979.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 504 bits (1298), Expect = e-144, Method: Compositional matrix adjust. Identities = 250/263 (95%), Positives = 257/263 (97%) Query: 1 MIRKLIPHLVATATLAFTLGAHAADKLVIAATPVPHAEILEHIKPVLAKEGIDLQVKVFT 60 MIRKLIPHL A A LAF++GAHAADKLVIAATPVPHAEILEHIKP LAKEGIDLQVKVFT Sbjct: 1 MIRKLIPHLFAGAALAFSVGAHAADKLVIAATPVPHAEILEHIKPALAKEGIDLQVKVFT 60 Query: 61 DYVQPAVQTNEKQVDGNFFLHQPYLDQFKKSHKNDIEVPITKVHVEPFAAYSQKYKKVAD 120 DYVQPA QTNEKQVDGNFFLHQPYLDQFKKSHKNDIEVP+ KVHVEPFAAYSQKYKK+AD Sbjct: 61 DYVQPAAQTNEKQVDGNFFLHQPYLDQFKKSHKNDIEVPVAKVHVEPFAAYSQKYKKIAD 120 Query: 121 IPNGATIAIPNDPSNSGRALLLLARNGLIKLKDSSNISSTQKDIVENPKKLKFRALEAAT 180 IPNGATIAIPNDPSNSGRALLLLARNGLIKLKD++NIS+TQKDIVENPKKLKFRALEAAT Sbjct: 121 IPNGATIAIPNDPSNSGRALLLLARNGLIKLKDNTNISATQKDIVENPKKLKFRALEAAT 180 Query: 181 LPRVLNQVDVALINTNYALEAKLNPVKDSLFIEDANSPYANLLVAREDNKDSPAIKKLAA 240 LPRVLNQVDVALINTNYALEAKLNPVKDSLFIEDANSPYANLLVAREDNKDSPAIKKLAA Sbjct: 181 LPRVLNQVDVALINTNYALEAKLNPVKDSLFIEDANSPYANLLVAREDNKDSPAIKKLAA 240 Query: 241 ALNSPDVKKFIEEKYQGAIVPAF 263 ALNSPDVKKFIEEKYQGAIVPAF Sbjct: 241 ALNSPDVKKFIEEKYQGAIVPAF 263 >gi|300310325|ref|YP_003774417.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 211 bits (538), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 114/267 (42%), Positives = 164/267 (61%), Gaps = 6/267 (2%) Query: 1 MIRKLIPHLVATATLAFTL---GAHAADKLVIAATPVPHAEILEHIKPVLAKEGIDLQVK 57 M R+ + +A LA L A A D++ + T PHAEI+E +K +L K+G+ ++V Sbjct: 1 MKRRQLIQFIAGLGLAAGLVSAPAFAQDQIKMGVTAGPHAEIMEQVKKLLEKDGVQMKVI 60 Query: 58 VFTDYVQPAVQTNEKQVDGNFFLHQPYLD-QFKKSHKNDIEVPITKVHVEPFAAYSQKYK 116 FTDY+QP +D N + HQPYLD Q K + V T P YS+K K Sbjct: 61 EFTDYIQPNAALAAGDLDANSYQHQPYLDAQIKDRGYKFVSVGSTITF--PMGVYSKKIK 118 Query: 117 KVADIPNGATIAIPNDPSNSGRALLLLARNGLIKLKDSSNISSTQKDIVENPKKLKFRAL 176 + D+ GA + +PNDP+N GRALL+L G+IKLK + + +T DIVENPKK+K L Sbjct: 119 SLNDLKQGARVGVPNDPTNGGRALLVLQAKGVIKLKADAGLKATPLDIVENPKKIKIVEL 178 Query: 177 EAATLPRVLNQVDVALINTNYALEAKLNPVKDSLFIEDANSPYANLLVAREDNKDSPAIK 236 +AA LPR L+ D A+IN NYA A L+P KD++ +E + PYAN++ R +KD P + Sbjct: 179 DAAQLPRSLDDFDAAVINGNYAESAGLSPTKDAIAVEASTGPYANVIAVRIADKDKPWVA 238 Query: 237 KLAAALNSPDVKKFIEEKYQGAIVPAF 263 KL A +SP+VKKF+ EKY+G+++ ++ Sbjct: 239 KLVKAYHSPEVKKFVLEKYKGSVITSW 265 >gi|300314030|ref|YP_003778122.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 276 Score = 197 bits (502), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 103/270 (38%), Positives = 161/270 (59%), Gaps = 8/270 (2%) Query: 1 MIRKLIPHLVAT-ATLAFTLGAHAADKLVIAATPVPHAEILEHIKPVLAKEGIDLQVKV- 58 +R+L +V+ A+L A A + + T PHA+I E + V ++ +VK+ Sbjct: 8 WLRRLSTLMVSMLASLVLNAQAAADQVIRVGVTSGPHAQIFEQARRVFERDNPGYKVKII 67 Query: 59 -FTDYVQPAVQTNEKQVDGNFFLHQPYLDQFKKSHKNDIEVPITKVHVEPFAAYSQKYKK 117 F DY+QP + ++D N + H+P+L+ K+ + K + P A YS+KY+K Sbjct: 68 EFNDYIQPNAALDAGELDANSYQHRPFLNAQIKTRGYKLYAE-GKTMIGPMAIYSRKYRK 126 Query: 118 VADIPNGATIAIPNDPSNSGRALLLLARNGLIKLKDS----SNISSTQKDIVENPKKLKF 173 + D+P GA I IPNDP+N R LLLL ++G IKL+ + ++T DI ENPKK KF Sbjct: 127 LEDVPVGARIGIPNDPANESRVLLLLQKHGFIKLRAGIDPLTGTNATPIDITENPKKWKF 186 Query: 174 RALEAATLPRVLNQVDVALINTNYALEAKLNPVKDSLFIEDANSPYANLLVAREDNKDSP 233 ++AA LPR L+ +D + +N +YA +A LNP +DSL +E +SPYA L+ RE ++ P Sbjct: 187 VEIDAAQLPRTLDDLDASAVNADYAAKAGLNPARDSLVVESGDSPYACLIAVREKDRAQP 246 Query: 234 AIKKLAAALNSPDVKKFIEEKYQGAIVPAF 263 + KL A SP+VK++IE +++G I+ A+ Sbjct: 247 WLGKLVQAYQSPEVKRYIETEFKGGILAAW 276 >gi|300311120|ref|YP_003775212.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 185 bits (470), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 108/268 (40%), Positives = 159/268 (59%), Gaps = 9/268 (3%) Query: 4 KLIPHLVATATLAFTLG---AHAADKLVI-AATPVPHAE-ILEHIKPVLAKEGIDLQVKV 58 K I L A L+ L A DK I V AE I + +K V A++G+++Q V Sbjct: 8 KNIKRLAAIGALSLALVPQLGQAQDKQKIKVGISVGSAEAIFDVVKKVAARDGLEIQTVV 67 Query: 59 FTDYVQPAVQTNEKQVDGNFFLHQPYLDQFKKSHKNDIEVPITKVHVEPFAAYSQKYKKV 118 F+DY+QP +D N F H+PYL+ + I VP+ P YS+K++ V Sbjct: 68 FSDYLQPNAALAAGDLDANAFQHRPYLESQIAARGYRI-VPVGLTITAPLGIYSRKFRSV 126 Query: 119 ADIPNGATIAIPNDPSNSGRALLLLARNGLIKLK---DSSNISSTQKDIVENPKKLKFRA 175 +P GA I I NDPSN RALLLL + GLI+LK + +++T D++ENP+KLK Sbjct: 127 EQLPQGAAIGIQNDPSNGNRALLLLQKAGLIRLKPGVGENGVNATPLDVIENPRKLKLVE 186 Query: 176 LEAATLPRVLNQVDVALINTNYALEAKLNPVKDSLFIEDANSPYANLLVAREDNKDSPAI 235 L+AA LPR L+ + A IN +YA +A L+ KD++ +ED YAN++ R ++KD P + Sbjct: 187 LDAAQLPRSLDDLAAASINNDYAFKAGLSLQKDTIAVEDPRGRYANIIATRAEDKDRPWV 246 Query: 236 KKLAAALNSPDVKKFIEEKYQGAIVPAF 263 +KL A +S +V+KFIE +++G++VPAF Sbjct: 247 RKLVQAYHSEEVRKFIETEFKGSLVPAF 274 >gi|300311637|ref|YP_003775729.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 122 bits (306), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 120/235 (51%), Gaps = 7/235 (2%) Query: 8 HLVATATLAFTL-GAHAADKLVIAATPVPHAEILEHIKPVLAKEGIDLQVKVFTDYVQPA 66 HLV + +L A AADKL I P + + + ++GID+QV FTD+ P Sbjct: 5 HLVFLSLTVLSLQAAQAADKLRIGVVPGAYGDSVAVAAKEAKRQGIDVQVVEFTDWTTPN 64 Query: 67 VQTNEKQVDGNFFLHQPYLDQFKKSHKNDIEVPITKVHVEPFAAYSQKYKKVADIPNGAT 126 V + +D N+F HQP+LD + + + T + + YS KYK + +P GA Sbjct: 65 VALDAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGI-LSNVGLYSLKYKSLTALPQGAK 123 Query: 127 IAIPNDPSNSGRALLLLARNGLIKLKDSSNISSTQKDIVENPKKLKFRALEAATLPRVLN 186 + I NDP N GRALLLL GLIKLK + DI++NP+KL F +E L R+ Sbjct: 124 VGIANDPVNQGRALLLLQNVGLIKLKPKVGYLGSIDDIIDNPRKLSFVEVEGPQLVRITP 183 Query: 187 QVDVALINTNYALEAK-LNPVKDSLF--IEDANSPYANLLVAREDNKDSPAIKKL 238 VD+A ++ + AK +P + IEDA +A V R + + P ++K Sbjct: 184 DVDLAQGYPHFIVAAKAFDPSSGLAYSGIEDAR--FAIQFVTRANRVNDPVVQKF 236 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.133 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 696,627 Number of extensions: 25309 Number of successful extensions: 82 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 75 Number of HSP's successfully gapped: 5 Length of query: 263 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 180 Effective length of database: 1,226,865 Effective search space: 220835700 Effective search space used: 220835700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)