BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1450.p (516 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310885|ref|YP_003774977.1| methyl-accepting chemotaxis tra... 742 0.0 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 411 e-116 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 396 e-111 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 393 e-110 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 381 e-107 >gi|300310885|ref|YP_003774977.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 551 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/516 (81%), Positives = 462/516 (89%) Query: 1 MNPLRRLRLGARLAAGFAALLLLLIVITVIGITRMSSLDQTSIEISGSTYPKVNAAQKME 60 MNPLRRLRLGARLA GFAALLLLL+VITVIGITRMSSLD TS ++S YPKV+AAQKM+ Sbjct: 29 MNPLRRLRLGARLACGFAALLLLLVVITVIGITRMSSLDNTSTQLSAQIYPKVSAAQKMQ 88 Query: 61 YLMMNIARAARNIIILEDAAQMASNKKSIDKDLADYQKALEYLRTHASTDESRRLTALAD 120 YLMMNIAR+ARNIIIL D AQMASNK+ IDKDLA+Y + LE LR+ A T+E R++ Sbjct: 89 YLMMNIARSARNIIILSDEAQMASNKQGIDKDLAEYARLLEQLRSSAMTEEGRQMINAVA 148 Query: 121 EQSKAYFAFTADVVDLGLKNQNVEGQRLLFGPRYKTQGELLTTLQQLVTLFEGQMHEATQ 180 E SK YFAFT DVV LGLKNQN EGQRLLFGPRYK+QGELL L +LV +EGQM +A+ Sbjct: 149 EASKNYFAFTNDVVALGLKNQNEEGQRLLFGPRYKSQGELLARLTELVQRYEGQMQQASA 208 Query: 181 AAHDTYLTSSTILGVSAAVAVLLGLIAALAISRSITVPMADALDTARKVANGDLTKTITD 240 AH TY+TS+TILG +A VA+LLGL+AAL I+RSITVPMA+A+D ARKVANGDLTK I D Sbjct: 209 QAHATYVTSATILGGAAGVAILLGLLAALVITRSITVPMAEAVDAARKVANGDLTKDIRD 268 Query: 241 HAPDETGELLAALREMNRSLVDIVSSVRTGADTIATASQEIASGNQDLSARTEHQASSLE 300 ++PDETGELL ALREMN +LVDIV++VRTGADTIATASQEIA+GNQDLSARTEHQASSLE Sbjct: 269 NSPDETGELLVALREMNSALVDIVTNVRTGADTIATASQEIAAGNQDLSARTEHQASSLE 328 Query: 301 ETASSMEELTSTVQQNSANARHAAEMAQAATQIAGQGGEIVGQVVTTMDGIDASARKIVD 360 ETASSMEELTSTVQQNSANAR AAEMAQ+A+ IAGQGGE+VG VV TMD IDASARKIVD Sbjct: 329 ETASSMEELTSTVQQNSANARQAAEMAQSASGIAGQGGELVGDVVATMDDIDASARKIVD 388 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKVLIGD 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKVLIGD Sbjct: 389 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKVLIGD 448 Query: 421 SVEKVDSGAQLVKKAGHTMQEIVQSVAQVNTIIGQISAAGEEQRAGIEQVHQAVAQMDEV 480 SVEKVDSGA LVKKAG TMQEIV+SVAQVN +I QIS AGEEQRAGIEQV+QA+ QMDEV Sbjct: 449 SVEKVDSGAHLVKKAGQTMQEIVKSVAQVNAVINQISNAGEEQRAGIEQVNQAITQMDEV 508 Query: 481 TQQNAALVEQAAAASRAMQGQAAELAEQVSIFRLPA 516 TQQNAALVEQAAAASRAMQ QAA+LAE+VSIFRLPA Sbjct: 509 TQQNAALVEQAAAASRAMQTQAADLAEKVSIFRLPA 544 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 411 bits (1057), Expect = e-116, Method: Compositional matrix adjust. Identities = 270/542 (49%), Positives = 347/542 (64%), Gaps = 61/542 (11%) Query: 7 LRLGARLAAGF---AALLLLLIVITVIGITRMSSLDQTSIEISGSTYPKVNAAQKMEYLM 63 L++G RL GF AA+L++L+ + R+ + ++ ++ TY + M + Sbjct: 6 LKIGTRLYMGFGLVAAILVILVSVAYTNFARLGAANELNVH----TYEVRAQLRAMAESL 61 Query: 64 MNIARAARNIIILEDAAQMASNKKSIDKDLADY-------QKALEYLRTHAS--TDESRR 114 +NI R + ID L Y + ALE RT S T + +R Sbjct: 62 INIETGQRGFSL-----------SGIDASLEPYHLGMTTFKTALEKTRTLTSDNTLQQQR 110 Query: 115 LTALADEQSKAYFAFTADVVDL--------------------GLKNQNVEGQRLLFGPRY 154 L L+D + + + ++L G ++ R+L Sbjct: 111 LQELSDSEQRWLKSAIDPAIELRRAVREGREQMAAVVAFEQAGKGKSQMDSMRVLLDDLD 170 Query: 155 KTQGELLTTLQQLVTLFEGQMHEATQAAHDTYLTSSTILGVSAAVAVLLGLIAALAISRS 214 +T+ LL A +AA +TS+T++G A+A++L ++ A ++ + Sbjct: 171 RTESALLG-------------ERAEEAAALRSVTSTTLIG-GGAIALMLAVLLAWWLANN 216 Query: 215 ITVPMADALDTARKVANGDLTKTITDHAPDETGELLAALREMNRSLVDIVSSVRTGADTI 274 IT P+A A+ AR+VA+GDLT I + DETG LL AL++MN SLV IVS VR G + I Sbjct: 217 ITRPLALAVQLARRVASGDLTARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMI 276 Query: 275 ATASQEIASGNQDLSARTEHQASSLEETASSMEELTSTVQQNSANARHAAEMAQAATQIA 334 ATAS EIA+GN DLS+RTE QASSLEETASSMEELTSTVQQN+ANAR A MAQAA+ IA Sbjct: 277 ATASSEIATGNLDLSSRTEQQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIA 336 Query: 335 GQGGEIVGQVVTTMDGIDASARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFA 394 GG +V +VV TM+ I+ S+RKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFA Sbjct: 337 SSGGGVVARVVDTMEEINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA 396 Query: 395 VVATEVRSLAQRSAAAAKEIKVLIGDSVEKVDSGAQLVKKAGHTMQEIVQSVAQVNTIIG 454 VVA+EVRSLAQRSAAAAKEIK LI DSV KV+SG+ LV +AG TM+EIV+SV +V +I Sbjct: 397 VVASEVRSLAQRSAAAAKEIKALISDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMIN 456 Query: 455 QISAAGEEQRAGIEQVHQAVAQMDEVTQQNAALVEQAAAASRAMQGQAAELAEQVSIFRL 514 +ISAAGEEQR+GIEQV QAV QMD+VTQQNAALVEQAAAAS+++Q QA ELA+ VS+FRL Sbjct: 457 EISAAGEEQRSGIEQVSQAVGQMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRL 516 Query: 515 PA 516 A Sbjct: 517 EA 518 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 396 bits (1017), Expect = e-111, Method: Compositional matrix adjust. Identities = 256/516 (49%), Positives = 342/516 (66%), Gaps = 10/516 (1%) Query: 4 LRRLRLGARLAAGFAALLLLLIVITVIGITRMSSLDQTSIEISGSTYPK-VNAAQKMEYL 62 ++ L++G RLA GF ALL+L+ V+ +G+ R+ S+ + +++ K +A Q + Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAI 60 Query: 63 MMNIARAARNIIILEDAAQMASNKKSIDKD---LADYQKALEYLRTHASTDESRRLTALA 119 N R ++ +D A A +K ID ++ QK +E T A E +RL Sbjct: 61 KENGVRTF-AVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDA---EEKRLFDEV 116 Query: 120 DEQSKAYFAFTADVVDLGLKNQNVEGQRLLFGPRYKTQGELLTTLQQLVTLFEGQMHEAT 179 + AY A + D+ + + + K + + + F+ Q+ + T Sbjct: 117 GKLRAAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYAD-FQKQVIDQT 175 Query: 180 QAA-HDTYLTSSTILGVSAAVAVLLGLIAALAISRSITVPMADALDTARKVANGDLTKTI 238 AA + Y + ++L A+ ++LG A ++RSIT P+ A+ A VA GDLT I Sbjct: 176 AAAINRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRI 235 Query: 239 TDHAPDETGELLAALREMNRSLVDIVSSVRTGADTIATASQEIASGNQDLSARTEHQASS 298 + DETG+LLAAL+ MN +L+DIV VR G +TI TAS+EIA+GN DLSARTE QA S Sbjct: 236 DSSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGS 295 Query: 299 LEETASSMEELTSTVQQNSANARHAAEMAQAATQIAGQGGEIVGQVVTTMDGIDASARKI 358 LEETAS+ME+LTSTV+QN+ NAR A E+A +A+Q+A QGG +V QVV TM I AS++KI Sbjct: 296 LEETASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKI 355 Query: 359 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKVLI 418 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LI Sbjct: 356 ADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLI 415 Query: 419 GDSVEKVDSGAQLVKKAGHTMQEIVQSVAQVNTIIGQISAAGEEQRAGIEQVHQAVAQMD 478 DSVEKVD G++LV +AG TMQE+VQSVA+V ++ +I+ A +EQ GIEQV+ A+ +D Sbjct: 416 DDSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHID 475 Query: 479 EVTQQNAALVEQAAAASRAMQGQAAELAEQVSIFRL 514 E TQQNAALVEQAAAA+R+MQ QAA L + VS+FRL Sbjct: 476 ETTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRL 511 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 393 bits (1009), Expect = e-110, Method: Compositional matrix adjust. Identities = 252/520 (48%), Positives = 340/520 (65%), Gaps = 17/520 (3%) Query: 4 LRRLRLGARLAAGFAALLLLLIVITVIGITRMSSLDQTSIEISGSTYPKVNAAQKMEYLM 63 + L++ RLAA FA ++ LL V++V +++++++ +I Y KV A + + Sbjct: 5 FKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGV 64 Query: 64 MNIARAARNIII-LEDAAQMASNKKSIDKDLADYQKALEYLRTHASTDESRRLTALADEQ 122 + R I I +E N+ + +K A + A++ + +R++TA+ ++ Sbjct: 65 NEQIKYLRGIAIDIE-------NRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKK 117 Query: 123 SKA-------YFAFTADVVDLGLKNQNVEGQRLLFGPRYKTQGELLTTLQQLVTLFEGQM 175 +KA + A AD + L + + TQ L + + Q+ Sbjct: 118 AKALDEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQL 177 Query: 176 H-EATQAAHDTYLTSSTILGVSAAVAVLLGLIAALAISRSITVPMADALDTARKVANGDL 234 E +A D + L S A AVL +I ++RSI P+ +A+ A VA GDL Sbjct: 178 QAEGAKAVADGAMAIEVTLACSMA-AVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDL 236 Query: 235 TKTITDHAPDETGELLAALREMNRSLVDIVSSVRTGADTIATASQEIASGNQDLSARTEH 294 T I H+ DETG+L+ ALR+MN +L++IVS VR G ++I TAS EIASGN DLSARTE Sbjct: 237 TTRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQ 296 Query: 295 QASSLEETASSMEELTSTVQQNSANARHAAEMAQAATQIAGQGGEIVGQVVTTMDGIDAS 354 QA SLEETAS+MEE+TSTV+QN+ NAR A +MA +A++IA QGG+IVG+VV TMD I+ S Sbjct: 297 QAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQS 356 Query: 355 ARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEI 414 +RKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEI Sbjct: 357 SRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEI 416 Query: 415 KVLIGDSVEKVDSGAQLVKKAGHTMQEIVQSVAQVNTIIGQISAAGEEQRAGIEQVHQAV 474 K LI DSV KV+ G+ LV +AG TM+++V SV V I+ +ISAA EQ +GIE++++AV Sbjct: 417 KALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAV 476 Query: 475 AQMDEVTQQNAALVEQAAAASRAMQGQAAELAEQVSIFRL 514 QMDE TQQNAALVEQAAAA+++MQ QA L + +SIF+L Sbjct: 477 TQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKL 516 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 381 bits (979), Expect = e-107, Method: Compositional matrix adjust. Identities = 256/531 (48%), Positives = 343/531 (64%), Gaps = 34/531 (6%) Query: 1 MNPLRRLRLGARLAAGFAALLLLLIVITVIGITRMSSLDQTSIEISGSTYPKVNAAQKME 60 MN + + +G RL GFA +L I+I IG+ R+ + Q + E+ K E Sbjct: 1 MNIIGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPL-------KTE 53 Query: 61 YLMMN-----IARAARNIIILED---------AAQMASNKKSIDKDLADYQKALEYLRTH 106 LM + +A R I I + AA++A++ KS +YQK +E L Sbjct: 54 RLMADWYTNLVAGIRRTIAIAKSSDPALGPYFAAEVAASSKS----SGEYQKQVEAL--- 106 Query: 107 ASTDESRRLTALADEQSKAYFAFTADVVDLGLKNQNVEGQRLL---FGPRYKTQGELLTT 163 ST E + L E K Y + ++ E R+L F P + T Sbjct: 107 LSTPEEKALFQKIGELRKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQD---T 163 Query: 164 LQQLVTLFEGQMHEATQAAHDTYLTSSTILGVSAAVAVLLGLIAALAISRSITVPMADAL 223 +++LV +M + + S T++ V + +LLG++ A ++ IT P+ A+ Sbjct: 164 MRKLVDFQRKEMDDTAREIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAV 223 Query: 224 DTARKVANGDLTKTITDHAPDETGELLAALREMNRSLVDIVSSVRTGADTIATASQEIAS 283 D +R VA GDL+ I + DETG+LL +L++MN+SL IVS+VR+G DTI+TAS EIA+ Sbjct: 224 DVSRCVAEGDLSSEIAVTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAA 283 Query: 284 GNQDLSARTEHQASSLEETASSMEELTSTVQQNSANARHAAEMAQAATQIAGQGGEIVGQ 343 GN DLS+RTE QASSL ETAS+MEEL STV+QN+ NAR A+++A +A+ +A QGG +V Q Sbjct: 284 GNLDLSSRTEQQASSLAETASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQ 343 Query: 344 VVTTMDGIDASARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSL 403 VV TM I+AS+RKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+L Sbjct: 344 VVDTMGAINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTL 403 Query: 404 AQRSAAAAKEIKVLIGDSVEKVDSGAQLVKKAGHTMQEIVQSVAQVNTIIGQISAAGEEQ 463 AQRSA+AAKEIK LI DSV KVD G++LV++AG+TMQE+V SV +V I+ +ISAA EQ Sbjct: 404 AQRSASAAKEIKELINDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQ 463 Query: 464 RAGIEQVHQAVAQMDEVTQQNAALVEQAAAASRAMQGQAAELAEQVSIFRL 514 GIEQ++ A+ QMD+VTQQNAALVE+AAAA+ +MQ QA L + VS+FRL Sbjct: 464 THGIEQINLAITQMDQVTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.125 0.321 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 893,001 Number of extensions: 25072 Number of successful extensions: 460 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 246 Number of HSP's successfully gapped: 72 Length of query: 516 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 427 Effective length of database: 1,198,455 Effective search space: 511740285 Effective search space used: 511740285 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)