BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1447.p (133 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310884|ref|YP_003774976.1| chemotaxis regulator protein [H... 257 2e-70 gi|300311293|ref|YP_003775385.1| chemotaxis regulator protein [H... 239 8e-65 gi|300311026|ref|YP_003775118.1| chemotaxis response regulator r... 207 3e-55 gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbas... 165 1e-42 gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas... 82 2e-17 >gi|300310884|ref|YP_003774976.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1] Length = 133 Score = 257 bits (656), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 124/133 (93%), Positives = 130/133 (97%) Query: 1 MADTDQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSTALKILESGASNITFVLTDW 60 MA T+QHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGS+ALKILESGASNITFVLTDW Sbjct: 1 MAATEQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILESGASNITFVLTDW 60 Query: 61 NMPVMDGLTLLKKIRATPALAHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNAATLKE 120 NMPVMDGLTLLKKIR+TPAL+HLPVLMITAEAKKENIVMAAQEGADGYIVKPFNA TLKE Sbjct: 61 NMPVMDGLTLLKKIRSTPALSHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNATTLKE 120 Query: 121 KIEKILSRRAQMK 133 KIEKIL+RRA M+ Sbjct: 121 KIEKILARRAHMQ 133 >gi|300311293|ref|YP_003775385.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1] Length = 135 Score = 239 bits (609), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 116/132 (87%), Positives = 125/132 (94%) Query: 1 MADTDQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSTALKILESGASNITFVLTDW 60 MA DQ+FLVVDDFSTMRRIVSGLLKELEYTKIVEADDGS+ALKILE+GA +TFVLTDW Sbjct: 1 MAADDQYFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILEAGALPVTFVLTDW 60 Query: 61 NMPVMDGLTLLKKIRATPALAHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNAATLKE 120 NMPVMDGLTLLKKIRATP++AHLPVLMITAEAKKENIV AAQ GADGYIVKPFNAATLK+ Sbjct: 61 NMPVMDGLTLLKKIRATPSMAHLPVLMITAEAKKENIVEAAQSGADGYIVKPFNAATLKD 120 Query: 121 KIEKILSRRAQM 132 KIEKIL+RRA + Sbjct: 121 KIEKILARRAHL 132 >gi|300311026|ref|YP_003775118.1| chemotaxis response regulator receiver domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 134 Score = 207 bits (527), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 99/129 (76%), Positives = 112/129 (86%) Query: 4 TDQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSTALKILESGASNITFVLTDWNMP 63 TDQHFLVVDDFSTMRRI+ GLLKELEY K+ +ADDG++A KILESGA I+FV+TDWNMP Sbjct: 3 TDQHFLVVDDFSTMRRIIIGLLKELEYLKVTDADDGTSAWKILESGALPISFVITDWNMP 62 Query: 64 VMDGLTLLKKIRATPALAHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNAATLKEKIE 123 MDGL LLKKIR TP L LPVLM++AEAKKENIV+AA+ GADGYIVKPFNAATL +KI Sbjct: 63 GMDGLGLLKKIRETPRLKRLPVLMVSAEAKKENIVLAAETGADGYIVKPFNAATLDDKIS 122 Query: 124 KILSRRAQM 132 KIL RR+ M Sbjct: 123 KILQRRSSM 131 >gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 131 Score = 165 bits (418), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 83/130 (63%), Positives = 99/130 (76%), Gaps = 2/130 (1%) Query: 1 MADTDQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSTALKILESGASNITFVLTDW 60 M+ + FLVVDDFSTMRRIV LLKEL YT + EA+DG AL+ L S FV++DW Sbjct: 1 MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRS--DQFDFVVSDW 58 Query: 61 NMPVMDGLTLLKKIRATPALAHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNAATLKE 120 NMP MDGLT+L++IR PAL+ LPVLM+TAEAKKENIV AAQ GA+GY+VKPF AATL E Sbjct: 59 NMPNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDE 118 Query: 121 KIEKILSRRA 130 K+ KI + A Sbjct: 119 KLGKIFEKMA 128 >gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 81.6 bits (200), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 3/122 (2%) Query: 6 QHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSTALKILESGASNITFVLTDWNMPVM 65 + L VDD ++R++V LK Y + EA DG AL+ ++ + VLTD NMP M Sbjct: 3 KTILAVDDSGSLRQMVVFSLKAAGYN-VTEAVDGVDALE--KAKSQTFDLVLTDQNMPRM 59 Query: 66 DGLTLLKKIRATPALAHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNAATLKEKIEKI 125 DGLTL++ +R + A +P+LM+T E E GA+G++VKPF+ L E + K+ Sbjct: 60 DGLTLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKV 119 Query: 126 LS 127 + Sbjct: 120 IG 121 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.132 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 367,361 Number of extensions: 12932 Number of successful extensions: 152 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 162 Number of HSP's successfully gapped: 27 Length of query: 133 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 58 Effective length of database: 1,264,745 Effective search space: 73355210 Effective search space used: 73355210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)