BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1442.p
         (181 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310881|ref|YP_003774973.1| hypothetical protein Hsero_1552...   334   2e-93

>gi|300310881|ref|YP_003774973.1| hypothetical protein Hsero_1552
           [Herbaspirillum seropedicae SmR1]
          Length = 182

 Score =  334 bits (857), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 154/178 (86%), Positives = 164/178 (92%)

Query: 1   MKIDRIHHVAYRCKDAQQTVAWYQKYLNMDFILAIAEDQVPSTKASDPYMHIFLDAGHGN 60
           M I+RIHHVAYRCKDA+QTV WY KYLNM FILAIAEDQVPST+ +DPYMH+FLDAG GN
Sbjct: 2   MNIERIHHVAYRCKDARQTVEWYGKYLNMGFILAIAEDQVPSTRQADPYMHVFLDAGQGN 61

Query: 61  VLAFFEIPNSPAMGRDTNTPAWVQHIAFKVDSEATLTEVMQRLQADGIDVVGITDHTIFK 120
           VLAFFEIPNSP MGRD NTPAWVQH+AFKVDSEATL EVMQRLQADGI+VVG+TDHTIFK
Sbjct: 62  VLAFFEIPNSPPMGRDANTPAWVQHLAFKVDSEATLKEVMQRLQADGIEVVGVTDHTIFK 121

Query: 121 SIYFFDPSGHRIELAADCATSEQMRRLDEVKWDMLEEWSRTRRAPKHAAWMHAQEFTA 178
           SIYFFDP+GHRIELAADC T EQM+RLDEVKW MLEEWSRTRRAPKHAAWMH QEF A
Sbjct: 122 SIYFFDPNGHRIELAADCGTPEQMQRLDEVKWAMLEEWSRTRRAPKHAAWMHEQEFAA 179


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.132    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 594,307
Number of extensions: 22821
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 102
Effective length of database: 1,245,805
Effective search space: 127072110
Effective search space used: 127072110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)