BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1441.p
         (159 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310880|ref|YP_003774972.1| transcription regulator protein...   268   2e-73

>gi|300310880|ref|YP_003774972.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 156

 Score =  268 bits (684), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 130/150 (86%), Positives = 141/150 (94%)

Query: 4   LGNVCYHAGMKLQAFFPYQLAQLAEAVSRSVASVYADRFGLTRDEWRILAALAEEGQMQA 63
            GNVCYH  MKLQ FFPYQLAQLAEAVSRSVA+VYADRFGLTRDEWRILAALAE+GQMQ 
Sbjct: 4   FGNVCYHVRMKLQDFFPYQLAQLAEAVSRSVATVYADRFGLTRDEWRILAALAEQGQMQG 63

Query: 64  SDLVPHTSLDKMQVSRALARMEEAGLVLRQPSPEDARARIVKPTAQGRKLYRKIVPMVEQ 123
           SDL PH SLDKMQVSRALARMEEAGL++R+PSP DARARIVKPTAQ RKLYRKIVPMVEQ
Sbjct: 64  SDLGPHASLDKMQVSRALARMEEAGLIVREPSPHDARARIVKPTAQARKLYRKIVPMVEQ 123

Query: 124 REAFLLQALSRTEREALMSAIEKLRERAMQ 153
           REAFLL+ALS+TEREALMSA++K+RERA+Q
Sbjct: 124 REAFLLEALSKTEREALMSAMQKVRERALQ 153


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 438,556
Number of extensions: 16308
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 2
Length of query: 159
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,250,540
Effective search space: 101293740
Effective search space used: 101293740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)