BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1440.p
         (307 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310066|ref|YP_003774158.1| hypothetical protein Hsero_0731...   316   2e-87

>gi|300310066|ref|YP_003774158.1| hypothetical protein Hsero_0731
           [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score =  316 bits (809), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 143/252 (56%), Positives = 194/252 (76%)

Query: 55  DQITWGKHHVPPYMIQEGPRAHQGIFDLILDVLKSRLPQYQHVELDAAFPRIINEIRNGH 114
           +QI WG+HHVPPYMI+EG  A +GIFDL L V+ S LPQYQHV+L A FPR+I+EIR G 
Sbjct: 29  NQIIWGRHHVPPYMIREGEWAGRGIFDLTLGVVTSHLPQYQHVDLAAPFPRVISEIRKGS 88

Query: 115 HWCFVGALKTPEREQYGYFSLPISIFLPLQIIVRKNDVSRFNNVESVQDLLRNRRLVTSV 174
           HWC++GAL+T ERE Y YFSLP SIFLPL++IVR++ +++F++ +S++ LL+NR+LVTSV
Sbjct: 89  HWCYIGALRTSEREAYAYFSLPTSIFLPLRVIVRRDRLAQFSHPQSLKSLLQNRQLVTSV 148

Query: 175 MRGRSYGPQLDALLMANPPQENYSDLKEAIGMLLAGHLDYLVESPLVAFDLASHMGHDGA 234
           MR RSY P +D LL   P +ENYS+  EAI MLLAG +DY++E PL+AF  A  +GH   
Sbjct: 149 MRDRSYSPTVDRLLAEYPARENYSEQIEAISMLLAGRIDYMIELPLLAFYQARLLGHADE 208

Query: 235 LAKIQTAEQGAITYDRILCPKNAWGQQAIENINEILLAVRGKPFYRRIVEKWNDPESVKV 294
           LA ++T E   + ++R++CP+NAWG+Q I+ +N++LLA R  P YR +VE+W+DPES   
Sbjct: 209 LAAVRTEEADEVVFNRVMCPRNAWGRQVIDQVNQVLLAERPTPAYRAMVERWHDPESTAE 268

Query: 295 IRRIYDAEFLQA 306
           IRR+YD  FL+ 
Sbjct: 269 IRRLYDKVFLKT 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 949,190
Number of extensions: 37385
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,217,395
Effective search space: 270261690
Effective search space used: 270261690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)