BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1438.p (580 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis tra... 841 0.0 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 451 e-128 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 389 e-109 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 343 2e-95 gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis tra... 338 5e-94 >gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 582 Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/584 (77%), Positives = 494/584 (84%), Gaps = 6/584 (1%) Query: 1 MFSSLTVGRKLGLAFLVLVVVSLIGSSVSLFNFARLEEASGMNVHTYEVMGAADDMLLNM 60 M S+TVGRKLGLAFL +VVV+L+GSS+SL NF RLE+AS MN+HTY+VMG ADDMLLNM Sbjct: 1 MSGSMTVGRKLGLAFLCVVVVALVGSSLSLLNFNRLEDASAMNIHTYQVMGKADDMLLNM 60 Query: 61 VNVETGIRGYVASGNEAFLDPYKIGRKNFRTAFEKAKSLTADNPAQQKRLAEMLDLTDKI 120 VN+ETGIRGYVASGNEAFLDPYK GRK+F+ AF+ AKSLTADNP QQKRLAEM +L++KI Sbjct: 61 VNIETGIRGYVASGNEAFLDPYKGGRKDFKVAFDDAKSLTADNPVQQKRLAEMQELSNKI 120 Query: 121 EEVDQMLMKLRKEANASASTQELQSYFGATHDKIYMDRFRAVQQEFVQAEESLLSVRSEL 180 EE+DQ L+KLRKEANAS S Q LQ+YFGATHDKI+MDRFR VQ+EFV AEESLL R EL Sbjct: 121 EEIDQNLIKLRKEANASGSQQALQTYFGATHDKIFMDRFRVVQKEFVDAEESLLKERGEL 180 Query: 181 VHTLSQSTLWTLIGAGAVTILLAIGAGFTITRSILHALGGEPAQAASVAQSIAAGDLTVA 240 V +LS+STL +I AGA+T+LLAIGAG ITRSI++ALGGEP AA VAQ IAAGDLTVA Sbjct: 181 VRSLSKSTLIVMIAAGALTVLLAIGAGLLITRSIINALGGEPGAAADVAQQIAAGDLTVA 240 Query: 241 VALKPNDRTSLMASLVSMKDQLTNIVRGIQASGESITVAAGEIATGNTDLSQRTEEQAAS 300 V LKPND SLMASL SM++QLT IVRGIQ SGESI+VAA EIATGNTDLSQRTEEQAAS Sbjct: 241 VPLKPNDSHSLMASLGSMREQLTTIVRGIQTSGESISVAANEIATGNTDLSQRTEEQAAS 300 Query: 301 LEETASSMEQLTSTVRQNSDNAKQANALAENASGLAVKGGEVVSRVIDTMNEISDSSSKV 360 LEETASSME+LTSTVRQNSDNA+QAN LAENAS LA KGGEVVSRVIDTMNEISDSSSKV Sbjct: 301 LEETASSMEELTSTVRQNSDNARQANTLAENASTLAAKGGEVVSRVIDTMNEISDSSSKV 360 Query: 361 SDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKDVKDLI 420 SDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKDVKDLI Sbjct: 361 SDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDLI 420 Query: 421 TLSTERVGRGTQLVGEAGKTIGEVVQAVRNVTDIMNEISAASSEQTAGIEQVNQALVQMD 480 TLS ERV RGT LVGEAG+TI EVVQAVRNVTDIMNEI+AASSEQT GIEQVNQAL QMD Sbjct: 421 TLSGERVERGTHLVGEAGQTINEVVQAVRNVTDIMNEITAASSEQTTGIEQVNQALSQMD 480 Query: 481 QVTQQNAALVEQAAAAAQAMSEQAVELRAAVGVFKVAGTSQARVAPARVAPRPA----PA 536 QVTQQNAALVEQAAAAAQAMSEQA ELR+AVGVFK G + V P V+PRPA PA Sbjct: 481 QVTQQNAALVEQAAAAAQAMSEQATELRSAVGVFKTGGGTA--VQPRPVSPRPAKVVNPA 538 Query: 537 PVAAAVTKPVLREAAPLPSPKKSEAVRTAASSSHKKADEEWETF 580 P A L A + + + A+S A EWETF Sbjct: 539 PKVGAAKTRALPPKAAATAHTANAVKKEASSPKAADASGEWETF 582 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 451 bits (1160), Expect = e-128, Method: Compositional matrix adjust. Identities = 287/597 (48%), Positives = 393/597 (65%), Gaps = 32/597 (5%) Query: 2 FSSLTVGRKLGLAFLVLVVVSLIGSSVSLFNFARLEEASGMNVHTYEVMGAADDMLLNMV 61 + L +G +L + F ++ + +I SV+ NFARL A+ +NVHTYEV M +++ Sbjct: 3 LADLKIGTRLYMGFGLVAAILVILVSVAYTNFARLGAANELNVHTYEVRAQLRAMAESLI 62 Query: 62 NVETGIRGYVASGNEAFLDPYKIGRKNFRTAFEKAKSLTADNPAQQKRLAEMLD-----L 116 N+ETG RG+ SG +A L+PY +G F+TA EK ++LT+DN QQ+RL E+ D L Sbjct: 63 NIETGQRGFSLSGIDASLEPYHLGMTTFKTALEKTRTLTSDNTLQQQRLQELSDSEQRWL 122 Query: 117 TDKIEEVDQMLMKLRKEANASASTQELQSYFGATHDKIYMDRFRAVQQEFVQAEESLLSV 176 I+ ++ +R+ A+ + ++ A K MD R + + + E +LL Sbjct: 123 KSAIDPAIELRRAVREGREQMAA---VVAFEQAGKGKSQMDSMRVLLDDLDRTESALLGE 179 Query: 177 RSELVHTLSQSTLWTLIGAGAVTILLAIGAGFTITRSILHALGGEPAQAASVAQSIAAGD 236 R+E L T TLIG GA+ ++LA+ + + +I L A A +A+ +A+GD Sbjct: 180 RAEEAAALRSVTSTTLIGGGAIALMLAVLLAWWLANNITRPL----ALAVQLARRVASGD 235 Query: 237 LTVAVALKPNDRT-SLMASLVSMKDQLTNIVRGIQASGESITVAAGEIATGNTDLSQRTE 295 LT + ++ D T +L+ +L M + L IV G++ E I A+ EIATGN DLS RTE Sbjct: 236 LTARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTE 295 Query: 296 EQAASLEETASSMEQLTSTVRQNSDNAKQANALAENASGLAVKGGEVVSRVIDTMNEISD 355 +QA+SLEETASSME+LTSTV+QN+ NA++AN +A+ AS +A GG VV+RV+DTM EI+D Sbjct: 296 QQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEIND 355 Query: 356 SSSKVSDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKD 415 SS K+ DII+VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAK+ Sbjct: 356 SSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKE 415 Query: 416 VKDLITLSTERVGRGTQLVGEAGKTIGEVVQAVRNVTDIMNEISAASSEQTAGIEQVNQA 475 +K LI+ S +V G+ LV EAG T+ E+V++V+ VT+++NEISAA EQ +GIEQV+QA Sbjct: 416 IKALISDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQA 475 Query: 476 LVQMDQVTQQNAALVEQAAAAAQAMSEQAVELRAAVGVFKV-AGTSQARVAPARVAPRPA 534 + QMDQVTQQNAALVEQAAAA+Q++ EQA EL AV VF++ AG + VAP PA Sbjct: 476 VGQMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLEAGQA------LEVAPEPA 529 Query: 535 PAPVAAAVT--KPVLREAAPLPSPKKSEAVRT--------AASSSHKKAD-EEWETF 580 PA VAA+ + +P R ++ LPSP A + A+ S AD +EW TF Sbjct: 530 PASVAASRSGVRPATR-SSRLPSPVGPSASPSASPMHPAPASGSRLSSADADEWVTF 585 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 389 bits (998), Expect = e-109, Method: Compositional matrix adjust. Identities = 238/481 (49%), Positives = 315/481 (65%), Gaps = 38/481 (7%) Query: 79 LDPYKIGRKNFRTAFEKAKSLTADNPAQQKRLAEMLDLTDKIEEVDQMLMKLRKEANASA 138 ++ K+ K ++ A EK + D P +R E+ DL A +A Sbjct: 82 IERIKVQEKAYQDAREKLGKMF-DQPDTTRREHELFDLI----------------AQNAA 124 Query: 139 STQEL--QSYFGATHDK------IYMDRFRAVQQEFVQAEESLLSVRSELVHTLSQ---- 186 T+ L Q+ A DK + + R VQ +++ + L EL + S Sbjct: 125 DTEPLMNQAVTLAQQDKSAELISLLTQKIRPVQAKWLDNLDELGRFEDELNNQASAAADT 184 Query: 187 ------STLWTLIGAGAVTILLAIGAGFTITRSILHALGGEPAQAASVAQSIAAGDLTVA 240 +T WTL+ AG+V LLA+ A F I RS+LH LGGEPAQA +A IA G+L V+ Sbjct: 185 TYRSILTTTWTLV-AGSV--LLAVAAAFLIVRSVLHQLGGEPAQAQELAAQIAQGNLAVS 241 Query: 241 VALKPNDRTSLMASLVSMKDQLTNIVRGIQASGESITVAAGEIATGNTDLSQRTEEQAAS 300 + L D+ SLMASL +M+ QLT IV GI+ S ESI+ AA +IA GN DLS+RTEEQAAS Sbjct: 242 IPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEEQAAS 301 Query: 301 LEETASSMEQLTSTVRQNSDNAKQANALAENASGLAVKGGEVVSRVIDTMNEISDSSSKV 360 LEETASSME++TSTV QN+ NA Q + LA +AS A KGGEVV RV+ TM +IS S+ K+ Sbjct: 302 LEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQSAYKI 361 Query: 361 SDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKDVKDLI 420 ++II +EGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA +AK+++ LI Sbjct: 362 TEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEIRGLI 421 Query: 421 TLSTERVGRGTQLVGEAGKTIGEVVQAVRNVTDIMNEISAASSEQTAGIEQVNQALVQMD 480 S + V G +LV EAG T+ EVV++++ V D+M+EI+AAS+EQ++GI Q+N A+ QMD Sbjct: 422 ESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAISQMD 481 Query: 481 QVTQQNAALVEQAAAAAQAMSEQAVELRAAVGVFKVAGTSQARVAPARVAPRPAPAPVAA 540 +VTQQNAALVE++A+AAQ+M++QA LR AV VF++ A P PA ++A Sbjct: 482 EVTQQNAALVEESASAAQSMAQQANSLRDAVAVFRIEQPQPAVAYPREQVIHPAMGLLSA 541 Query: 541 A 541 A Sbjct: 542 A 542 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 343 bits (881), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 264/612 (43%), Positives = 364/612 (59%), Gaps = 72/612 (11%) Query: 2 FSSLTVGRKLGLAFLVLVVVSLIGSSVSLFNFARLEEASGMNVHTYEVMGAADDMLLNMV 61 S + + +LG F L+VV + + V + N + +A+ D ++N Sbjct: 4 ISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDAT--------------DEIVNDR 49 Query: 62 NVETGIRGYVASGNEAFLDPYKIGRKNFRTAFEKAKSLTADNPAQQKRLAEMLD-----L 116 V+ VA G + D G ++ R A + A NP +QK+ + +D + Sbjct: 50 YVK------VALGTQ-ITDKVNTGARSLRNA------IMARNPEEQKKYLDRMDTYTSQV 96 Query: 117 TDKIEEVDQM--------LMKLRKEANASASTQEL--------QSYFGAT---HDKIY-- 155 ++ + E+++ L+ K+A A S + + Q AT DK Sbjct: 97 SEHLAEMEKRTNTPRGSELLAALKQARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPV 156 Query: 156 MDRFRAVQQEFVQAEESLLSVRSELVHTLSQSTLWTLIGAGAVTILLAIGAGFTITRSIL 215 D++ A +E V + SL+ +E S S + ++ V +LL+ ITRSI Sbjct: 157 QDKYFAAVKEMVSFQSSLMDKSAERASAASSSAINIMLVLSGVAVLLSALCAMLITRSIT 216 Query: 216 HALGGEPAQAASVAQSIAAGDLTVAVALKPNDRT-SLMASLVSMKDQLTNIVRGIQASGE 274 L +A VA ++AAGDLTV + D T +L+ +L SM D L IV ++A + Sbjct: 217 RPLN----EAVQVATAVAAGDLTVQIEATSKDETGALLGALKSMNDNLHRIVAEVRAGTD 272 Query: 275 SITVAAGEIATGNTDLSQRTEEQAASLEETASSMEQLTSTVRQNSDNAKQANALAENASG 334 +I A+ EIATGN DLS RTE+QA +LEETAS+ME+LTSTVRQN+DNA+QAN LAE AS Sbjct: 273 TINTASREIATGNLDLSSRTEQQAGALEETASAMEELTSTVRQNADNARQANTLAETASQ 332 Query: 335 LAVKGGEVVSRVIDTMNEISDSSSKVSDIITVIEGIAFQTNILALNAAVEAARAGEQGRG 394 +A++GG VV V+ TM +I+D+S K+ DII+VI+GIAFQTNILALNAAVEAARAGEQGRG Sbjct: 333 VAIQGGSVVGEVVQTMGQINDASRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRG 392 Query: 395 FAVVASEVRSLAQRSAGAAKDVKDLITLSTERVGRGTQLVGEAGKTIGEVVQAVRNVTDI 454 FAVVASEVR+LAQRSA AAK++K LI S ERV G++LVG+AG T+ EVV +V+ VTD+ Sbjct: 393 FAVVASEVRTLAQRSAAAAKEIKSLIDASVERVESGSRLVGQAGATMEEVVASVKRVTDV 452 Query: 455 MNEISAASSEQTAGIEQVNQALVQMDQVTQQNAALVEQAAAAAQAMSEQAVELRAAVGVF 514 + EI+AAS EQ+ GIEQ+NQA+VQMD+VTQQNAALVEQAAAAAQ++ EQ+ L VG+F Sbjct: 453 VAEITAASGEQSDGIEQINQAIVQMDEVTQQNAALVEQAAAAAQSLQEQSGRLSDTVGIF 512 Query: 515 KVAGTSQAR-----VAPARVAPRPAPA-PVAAAVTKPVLREAAPLPSPKKSEAVRTAASS 568 ++ G A AP + + + APA PV A KPV R +AP S + + Sbjct: 513 RL-GNDHAHQPSPLSAPVQRSVQVAPARPVLA--RKPVTRTSAPAKSIPAA-----QPVA 564 Query: 569 SHKKADEEWETF 580 AD +WE F Sbjct: 565 QAALADGQWEQF 576 >gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 338 bits (868), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 193/309 (62%), Positives = 240/309 (77%) Query: 210 ITRSILHALGGEPAQAASVAQSIAAGDLTVAVALKPNDRTSLMASLVSMKDQLTNIVRGI 269 I R I +LGGEPA A +A IA GDLTV V +P D SL+ ++ +M+++L +++GI Sbjct: 208 IIRRITGSLGGEPAYAVDIATRIANGDLTVQVQTRPGDTRSLLYAMATMRERLAGVIKGI 267 Query: 270 QASGESITVAAGEIATGNTDLSQRTEEQAASLEETASSMEQLTSTVRQNSDNAKQANALA 329 + ++I + A EIA GN DLS RTEEQA SL TAS+M+ LT+TV+QN+DNA+QA LA Sbjct: 268 RQGTDAIDIGAREIAAGNLDLSSRTEEQAGSLATTASNMDGLTATVKQNADNARQAGQLA 327 Query: 330 ENASGLAVKGGEVVSRVIDTMNEISDSSSKVSDIITVIEGIAFQTNILALNAAVEAARAG 389 +AS +A +GGEVV +V+ TM I+ SS K++DII VI+GIAFQTNILALNAAVEAARAG Sbjct: 328 HSASDIATRGGEVVGQVVQTMEGITGSSRKIADIIGVIDGIAFQTNILALNAAVEAARAG 387 Query: 390 EQGRGFAVVASEVRSLAQRSAGAAKDVKDLITLSTERVGRGTQLVGEAGKTIGEVVQAVR 449 EQGRGFAVVASEVRSLAQRSA AAK++K LI S +RVG G+ V AG+T+GEVV AVR Sbjct: 388 EQGRGFAVVASEVRSLAQRSAQAAKEIKALIEDSVQRVGSGSDQVARAGQTMGEVVAAVR 447 Query: 450 NVTDIMNEISAASSEQTAGIEQVNQALVQMDQVTQQNAALVEQAAAAAQAMSEQAVELRA 509 ++TDI+ EISAAS EQ GIEQVN A+ +MDQVTQQNAALVEQAAAAA ++ EQA L+A Sbjct: 448 SLTDIVGEISAASEEQRNGIEQVNLAIGEMDQVTQQNAALVEQAAAAAGSLEEQARRLKA 507 Query: 510 AVGVFKVAG 518 AV F+V G Sbjct: 508 AVSTFRVDG 516 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.124 0.320 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,200,856 Number of extensions: 39095 Number of successful extensions: 620 Number of sequences better than 1.0e-08: 71 Number of HSP's gapped: 321 Number of HSP's successfully gapped: 72 Length of query: 580 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 490 Effective length of database: 1,193,720 Effective search space: 584922800 Effective search space used: 584922800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)