BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1431.p
         (874 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311890|ref|YP_003775982.1| P pilus assembly protein, porin...    59   2e-09

>gi|300311890|ref|YP_003775982.1| P pilus assembly protein, porin
           PapC protein [Herbaspirillum seropedicae SmR1]
          Length = 764

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 2/144 (1%)

Query: 667 LNARGALAVHDGGITFGPYLGDTFALVEAKGAQGAKLFNGQ--GAVIDDNGFALLPSLSP 724
           L ARGALA  DGG+    ++ D+FA+V A G +   ++N        DDNG  LL  L  
Sbjct: 581 LGARGALAFMDGGVFASDWIDDSFAVVNASGVKNVGIYNENRYAGRTDDNGQLLLTDLRA 640

Query: 725 YHRNVVELASTGANQKSEILESQRIVIPYAGATLKLSFRTRSGHAMLIRLHRENGEPLPM 784
           Y  N + +         ++ +S + V P   + + + F  R    + + L    G  LP+
Sbjct: 641 YDVNKISVDVLDLPLTLQLDQSDQYVKPRDRSGVIVHFNARRASDVTLTLKDAAGNYLPI 700

Query: 785 GADVLDEQGEMVGMVGQGSQAYLR 808
           GA +   +  +   VG    +YL+
Sbjct: 701 GASIRVRETGLEAPVGYDGVSYLQ 724


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,752,566
Number of extensions: 120637
Number of successful extensions: 358
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 1
Length of query: 874
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 780
Effective length of database: 1,174,780
Effective search space: 916328400
Effective search space used: 916328400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 135 (56.6 bits)