BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1428.p (1085 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin... 207 4e-54 gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729... 181 3e-46 gi|300311948|ref|YP_003776040.1| sensor histidine kinase/respons... 179 1e-45 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 163 7e-41 gi|300313029|ref|YP_003777121.1| two component hybrid sensor his... 145 2e-35 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 723 Score = 207 bits (527), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 175/556 (31%), Positives = 273/556 (49%), Gaps = 48/556 (8%) Query: 471 LGAVWSRTRFSGQDVLLLGLIDLNMQKAHEALMREAKSMADRANQAKSMFLAQVSHEIRT 530 L A+W + LL L+ N + A + + +AK AD A + FL+ +SHEIRT Sbjct: 48 LAAIWGIHALT-----LLRLLRENARTAEK--LVQAKEAADHAMLTRGAFLSTMSHEIRT 100 Query: 531 PLHGAIGHMELLAREHLSPSQHQRVELIRHAFDMLMSLVNDILDITKIETQSITLAAEEL 590 P++ +G LL L Q + + I + L+ +VND+LD +KI+ + +A E Sbjct: 101 PMNAVLGMAGLLRSTRLDTQQAEFAKAIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEF 160 Query: 591 RVNDLLEECAQLFAPLALDKGLQFHCLPCAALEQPVRGDPRRLLQILQNLVGNAVKFTAS 650 + ++E A+ + A +K ++ + L + GDP R+ QIL NL+GNA+KFT + Sbjct: 161 DLAKVVEASAEALSFKAREKRVRLLAHLDSRLPPRLVGDPGRIRQILLNLLGNALKFTHA 220 Query: 651 GGITLSAQLLQSSQDKSIVRFEVADTGIGISPSARQRIFKSLQQADDSISQRFGGTGLGL 710 G + L Q LQ + D VRFEV D+GIG+ +R+F QAD S+++++GGTGLGL Sbjct: 221 GEVLLRVQALQVTSDHCRVRFEVRDSGIGMDEDTLRRLFSPFAQADSSVTRQYGGTGLGL 280 Query: 711 SLCRRLAELMGGDITLDSEVGKGSTFGAEISL-ARIQQAEQACVPPLQGRKVVVHVQDP- 768 S+C+RL ELMGG I ++S +G GS F E+ + PP R + + +P Sbjct: 281 SICKRLVELMGGSIGVESALGTGSCFWFELGIPVTTGPGMIRSEPPAADRPRRIALVEPH 340 Query: 769 -ATAAMLRAYLQHWGAEFVAPASATPAMLHLVAP----DGIAAFMSTPMNTSIASVLI-- 821 A+AAML YL+ E + SA+ A+ L P GI A + + + +V + Sbjct: 341 DASAAMLHEYLRSAALETLRFGSASDALAALTGPGASASGIDAVIVSTQVQDLDAVSVMA 400 Query: 822 -----RPDVVR----------QSSSMGHWRQVSAFDRRAW---------CSALADHAPTA 857 RP + R + S H + R+ +A A +P A Sbjct: 401 RLQAERPALRRVLLDHGVHGLDTGSKPHHEVLQLPLRKQQLLRALGVTDSAAEAQTSPHA 460 Query: 858 TASAPGLVVNPDVAGALEVLVVEDDYVNLTLIEQQLRVLGCKHLRLARDGQDALAQWRAH 917 +AP +G ++L+VED+ +N + QL +G +A +G +AL + H Sbjct: 461 RMAAPA-TPRQGHSGQRDILLVEDNVMNQKVAVYQLNAMGYA-ADIAANGLEALERLARH 518 Query: 918 RPDLLITDLGIPELDGVSLARRVRQEQRQ---ARIIATTAAGPASLAQ--LPAGLFDAVL 972 R L++ D +P LDG RR+R+ Q + I+A TA A + L AG+ D L Sbjct: 519 RYALVLMDCQMPLLDGYETTRRIRRMQGELAHTTIVAMTANAMAGDRERCLEAGM-DDYL 577 Query: 973 YKPSSLEQLRELLTRF 988 KP QL +L + Sbjct: 578 TKPLLRSQLSAMLAHY 593 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 181 bits (459), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 108/237 (45%), Positives = 139/237 (58%), Gaps = 4/237 (1%) Query: 507 KSMADRANQAKSMFLAQVSHEIRTPLHGAIGHMELLAREHLSPSQHQRVELIRHAFDMLM 566 K AD AN+AKS FLA VSHEIRTP++G +G ELL LS Q + I A L+ Sbjct: 338 KEEADHANEAKSHFLAMVSHEIRTPMNGILGLSELLMESGLSSKQRDYADSIHGATGGLV 397 Query: 567 SLVNDILDITKIETQSITLAAEELRVNDLLEECAQLFAPLALDKGLQFHC-LPCAALEQP 625 ++NDILD +KIE+ + L L++E + L+ P K +QF L C Sbjct: 398 RIINDILDFSKIESGKLDLEMVAFHPVRLVQELSDLYRPSLQRKDVQFDLHLDCPE-NLS 456 Query: 626 VRGDPRRLLQILQNLVGNAVKFTASGGITLSAQLLQSSQDKSIVR--FEVADTGIGISPS 683 V GDP RL Q+L NL+ NA+KFT +G + LS Q S R F + DTGIGISP Sbjct: 457 VVGDPARLKQVLGNLLSNAIKFTQAGHVQLSMSARQDESGPSRWRLFFAITDTGIGISPE 516 Query: 684 ARQRIFKSLQQADDSISQRFGGTGLGLSLCRRLAELMGGDITLDSEVGKGSTFGAEI 740 A Q++F+ QAD SIS+RFGGTGLGL++ + L ELMGG I S G+ + F EI Sbjct: 517 ALQQLFRPFAQADSSISRRFGGTGLGLAISKNLVELMGGTIACQSIPGESTRFSFEI 573 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 101/256 (39%), Positives = 158/256 (61%), Gaps = 6/256 (2%) Query: 492 DLNMQKAHEALMREAKSMADRANQAKSMFLAQVSHEIRTPLHGAIGHMELLARE-HLSPS 550 ++ K +A ++ AK A+ AN AKS F+A +SHE+RTPL+ +G+ ++L + + P+ Sbjct: 663 EIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIPPA 722 Query: 551 QHQRVELIRHAFDMLMSLVNDILDITKIETQSITLAAEELRVNDLLEECAQLFAPLALDK 610 + + +IR + + L+SL++ +LDI KIE + LA++EL + LE+ +FAP A K Sbjct: 723 RKDAIGVIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQK 782 Query: 611 GLQFHCLPCAALEQPVRGDPRRLLQILQNLVGNAVKFTASGGITLSAQLLQSSQDKSIVR 670 GL F L Q V D +RL QIL NL+GNAVKFT GG+TL + + I Sbjct: 783 GLHFRFDKSGRLPQIVHADQKRLRQILINLLGNAVKFTDHGGVTLRLR-----YAREIAY 837 Query: 671 FEVADTGIGISPSARQRIFKSLQQADDSISQRFGGTGLGLSLCRRLAELMGGDITLDSEV 730 F+V DTGIGI+ R+RIF +++ + + GTGLGL++ R L +MGG++++ S+V Sbjct: 838 FDVIDTGIGIADDDRERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELSVQSQV 897 Query: 731 GKGSTFGAEISLARIQ 746 G+GS+F +I L + Sbjct: 898 GQGSSFHLKIYLPEVH 913 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 163 bits (412), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 106/269 (39%), Positives = 159/269 (59%), Gaps = 10/269 (3%) Query: 487 LLGLIDLNMQKAHEALMREAKSMADRANQAKSMFLAQVSHEIRTPLHGAIGHMELLARE- 545 LL L ++ K L+ +A + +RANQ KS FLA +SHE+RTPL+ + +LLA Sbjct: 446 LLELQKDDLAKTQVVLVEKATEL-ERANQYKSEFLANMSHELRTPLNSTLILAKLLADNK 504 Query: 546 --HLSPSQHQRVELIRHAFDMLMSLVNDILDITKIETQSITLAAEELRVNDLLEECAQLF 603 +LS Q + + I A + L++L+NDILD++K+E + + E + L +E + F Sbjct: 505 QGNLSDEQVRFAQTISSAGNDLLALINDILDLSKMEAGKLDIVPESFPLTKLADELSASF 564 Query: 604 APLALDKGLQFHCLPCAALEQPVRGDPRRLLQILQNLVGNAVKFTASGGITLSAQLLQSS 663 A A KGL F + Q + D +RL QIL+NL+ NA+KFT G ++L ++ + Sbjct: 565 AITAQQKGLGFKVEVEPGVPQRMETDIQRLGQILKNLLSNAIKFTEKGEVSL--RIYPDA 622 Query: 664 QDKSIVRFEVADTGIGISPSARQRIFKSLQQADDSISQRFGGTGLGLSLCRRLAELMGGD 723 + + F V DTGIGI Q IF++ +QAD S +++GGTGLGLS+ R LA L+GGD Sbjct: 623 GGR--IAFAVRDTGIGIGEDQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGD 680 Query: 724 ITLDSEVGKGSTFGAEISLARIQQAEQAC 752 I + S +G+GS F +SL + +EQA Sbjct: 681 IRVTSRLGEGSIF--TLSLPPLYSSEQAV 707 >gi|300313029|ref|YP_003777121.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1524 Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 98/282 (34%), Positives = 163/282 (57%), Gaps = 3/282 (1%) Query: 465 DGGVSHLGA-VWSRTRFSGQDVLLLGL-IDLNMQKAHEALMREAKSMADRANQAKSMFLA 522 DGG+ ++ A + + +G+ V ++ + +D+ + E + +A+ A++AN AKS+FLA Sbjct: 843 DGGIRYVQARAYVQRDGAGRPVRVICINLDITQRIEFENNLVDARLKAEQANSAKSLFLA 902 Query: 523 QVSHEIRTPLHGAIGHMELLAREHLSPSQHQRVELIRHAFDMLMSLVNDILDITKIETQS 582 VSHEIRTP++G +G ++LL R P+Q ++ + L++L+ND+LD +K++ + Sbjct: 903 SVSHEIRTPMNGVLGMIQLLQRTQPLPAQQDYLDKAEISAKSLLNLLNDLLDFSKMDAKQ 962 Query: 583 ITLAAEELRVNDLLEECAQLFAPLALDKGLQFHCLPCAALEQPVRGDPRRLLQILQNLVG 642 + L + + A + A G+ H L + + GD RL Q+L NL G Sbjct: 963 LQLDLQAFELERFGHNLAAVLAGSPPQAGVSLHIALDPQLPRRLVGDAHRLQQVLVNLTG 1022 Query: 643 NAVKFTASGGITLSAQLLQSSQDKSI-VRFEVADTGIGISPSARQRIFKSLQQADDSISQ 701 NA+KFT G I + L +++ +R EV+DTGIGI+ IF + QA+ S ++ Sbjct: 1023 NALKFTHQGHIDVHFTRLDPLPGRTVALRVEVSDTGIGIAADRLDDIFDAFTQAEASTTR 1082 Query: 702 RFGGTGLGLSLCRRLAELMGGDITLDSEVGKGSTFGAEISLA 743 R+GGTGLGL++ + L LMGG + + SE G+GS F ++ LA Sbjct: 1083 RYGGTGLGLAISKHLVGLMGGQLQVSSEPGRGSRFWFDLQLA 1124 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,114,954 Number of extensions: 126399 Number of successful extensions: 700 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 666 Number of HSP's successfully gapped: 33 Length of query: 1085 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 990 Effective length of database: 1,170,045 Effective search space: 1158344550 Effective search space used: 1158344550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 136 (57.0 bits)