BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1420.p (138 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310251|ref|YP_003774343.1| hypothetical protein Hsero_0918... 134 3e-33 gi|300310095|ref|YP_003774187.1| hypothetical protein Hsero_0760... 83 9e-18 gi|300312708|ref|YP_003776800.1| hypothetical protein Hsero_3411... 75 2e-15 gi|300310277|ref|YP_003774369.1| hypothetical protein Hsero_0944... 67 6e-13 gi|300313609|ref|YP_003777701.1| hypothetical protein Hsero_4324... 65 3e-12 >gi|300310251|ref|YP_003774343.1| hypothetical protein Hsero_0918 [Herbaspirillum seropedicae SmR1] Length = 137 Score = 134 bits (337), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/138 (51%), Positives = 90/138 (65%), Gaps = 1/138 (0%) Query: 1 MSRPFITLGDKTSHGGTVISADHTSSIHGKYMARVGDKVVCPKCKGVFAIKSGAPDMVDS 60 MSRPFIT+GDKTSHGGTVIS D + IHGK +A +GD CP+CKG FAI SGA DM+ + Sbjct: 1 MSRPFITVGDKTSHGGTVISGDQSFLIHGKAVASIGDLTTCPRCKGTFAITSGAEDMI-T 59 Query: 61 QGRGYARHLDTTECGASLISAQATTTWSDDSMIGDSAADAKAEALSTTSQLAASTDSGIC 120 G+ AR D T CGA LI+ QA TT + +G +A A A + AA +SGIC Sbjct: 60 NGKAPARDGDRTACGAILIATQALTTHAAQQEVGSTAGTAADAANLAKANPAAPVESGIC 119 Query: 121 LDCLRKAAHFGSPIVIRE 138 L CL AA G+ +++R+ Sbjct: 120 LSCLMNAAKAGATMIVRD 137 >gi|300310095|ref|YP_003774187.1| hypothetical protein Hsero_0760 [Herbaspirillum seropedicae SmR1] Length = 85 Score = 82.8 bits (203), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 48/86 (55%), Positives = 57/86 (66%), Gaps = 2/86 (2%) Query: 1 MSRPFITLGDKTSHGGTVISADHTSSIHGKYMARVGDKVVCPKCKGVFAIKSGAPDMVDS 60 MS+P I LGDKTSHGGTVI A + + GK +ARVGDKV CP+ G I SG P M+ Sbjct: 1 MSQPVIVLGDKTSHGGTVIQASGVTMVGGKQVARVGDKVSCPR-HGSTTIASGDPTMI-I 58 Query: 61 QGRGYARHLDTTECGASLISAQATTT 86 G AR D T CGA LI++QATT+ Sbjct: 59 DGAPVARDGDKTACGAVLIASQATTS 84 >gi|300312708|ref|YP_003776800.1| hypothetical protein Hsero_3411 [Herbaspirillum seropedicae SmR1] Length = 87 Score = 75.1 bits (183), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/80 (53%), Positives = 49/80 (61%), Gaps = 1/80 (1%) Query: 3 RPFITLGDKTSHGGTVISADHTSSIHGKYMARVGDKVVCPKCKGVFAIKSGAPDMV-DSQ 61 R I LGDKTSHGG VISA T GK +A GD CPKCKG FAI+ G + Sbjct: 7 RAVIRLGDKTSHGGEVISASDTLKAMGKGVALEGDMTTCPKCKGQFAIQPGGGNSTRKHH 66 Query: 62 GRGYARHLDTTECGASLISA 81 G+ A H DTT CGASLI++ Sbjct: 67 GKQVAYHGDTTTCGASLIAS 86 >gi|300310277|ref|YP_003774369.1| hypothetical protein Hsero_0944 [Herbaspirillum seropedicae SmR1] Length = 88 Score = 66.6 bits (161), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 43/87 (49%), Positives = 49/87 (56%), Gaps = 2/87 (2%) Query: 1 MSRPFITLGDKTSHGGTVISADHTSSIHGKYMARVGDKVVCP-KCKGVFAIKSGAPDMVD 59 M+ I LGD TSHGG VI+A T I G +ARVGDKV+CP GV AI GAP Sbjct: 1 MAAAIIRLGDPTSHGGRVITASTTHLIGGLGVARVGDKVMCPLPGHGVNAIIEGAPSF-Q 59 Query: 60 SQGRGYARHLDTTECGASLISAQATTT 86 GR A H CG +L+S AT T Sbjct: 60 IDGRNVALHGQRAACGCTLVSTLATAT 86 >gi|300313609|ref|YP_003777701.1| hypothetical protein Hsero_4324 [Herbaspirillum seropedicae SmR1] Length = 88 Score = 64.7 bits (156), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/88 (46%), Positives = 49/88 (55%), Gaps = 2/88 (2%) Query: 1 MSRPFITLGDKTSHGGTVISADHTSSIHGKYMARVGDKVVCPK-CKGVFAIKSGAPDMVD 59 M P I LGD TSHGG VISA T ++HG +ARVGD V CP+ G I GAP + Sbjct: 1 MPLPIIRLGDSTSHGGKVISASPTHTLHGIGIARVGDLVSCPREGHGTTPIIEGAPTYLI 60 Query: 60 SQGRGYARHLDTTECGASLISAQATTTW 87 R A CG SLIS+ AT ++ Sbjct: 61 GD-RMVALQGHRAACGCSLISSLATASY 87 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.128 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 406,092 Number of extensions: 14094 Number of successful extensions: 63 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 59 Number of HSP's successfully gapped: 6 Length of query: 138 Length of database: 1,619,870 Length adjustment: 76 Effective length of query: 62 Effective length of database: 1,260,010 Effective search space: 78120620 Effective search space used: 78120620 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)