BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1419.p
         (169 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310250|ref|YP_003774342.1| hypothetical protein Hsero_0917...   127   4e-31

>gi|300310250|ref|YP_003774342.1| hypothetical protein Hsero_0917
           [Herbaspirillum seropedicae SmR1]
          Length = 168

 Score =  127 bits (319), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 92/165 (55%)

Query: 5   DVQSRLETLHNSMPALRLYALVDGVQYQAQLCKRFQSSSGLFPLFARTPDAALAHAGPWL 64
           +++ RL  L  + P LRLYALVDG  Y     +  + S  +  LF  T D  LA +GPWL
Sbjct: 4   EIKYRLAQLRTATPQLRLYALVDGFHYHQHHEQALEESPSVRGLFIGTVDEHLAPSGPWL 63

Query: 65  VDTAIANHVSMAELITLERDAPALTWLIASQDLEGLGQLLQLRLDVNLPDGRSALLRFWD 124
           +D   A    ++    LE    +++W+I + +L+ L   LQ R+ + LPDGR ALLR WD
Sbjct: 64  LDAESAPFDLVSHAALLETRVASVSWIITTMELDALAHALQSRMQMELPDGRLALLRLWD 123

Query: 125 PRVLVNLARTLDAAQREEFFGHIHEWHMLHEGRRVCIRRHHADAH 169
           PR L + AR  D  QR   F  I EW +L EGRRV I RH A  H
Sbjct: 124 PRALASAARDFDETQRRYLFEGITEWLLLREGRRVRIGRHDAQDH 168


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 505,157
Number of extensions: 18217
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,245,805
Effective search space: 112122450
Effective search space used: 112122450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)