BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1418.p
         (126 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310249|ref|YP_003774341.1| hypothetical protein Hsero_0916...   117   3e-28

>gi|300310249|ref|YP_003774341.1| hypothetical protein Hsero_0916
           [Herbaspirillum seropedicae SmR1]
          Length = 119

 Score =  117 bits (292), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 75/109 (68%)

Query: 12  MLTLTEAQWQNLLQGEARQFVAAVCDEFLTNRPEMRDQPGREVVLEHMRDAYDYAARIGF 71
           ML +TE Q+Q L   +A  FVAAV DEFL +RP+++ QPGR  ++  MR AYD    + F
Sbjct: 1   MLKITEEQFQKLQARDADNFVAAVADEFLVDRPDLQAQPGRSEIIARMRAAYDNGLTLSF 60

Query: 72  TSTPHIVRLMYLSADAPRIYDDPLVDHYLRKPGATPEQRLDDLDAMMKH 120
           T TP ++ +MY+SAD P I++ P    YL KPGATPEQRL+D+  ++++
Sbjct: 61  TETPSLIYMMYMSADYPGIFEQPGTQQYLSKPGATPEQRLNDMKDVLRY 109


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 445,286
Number of extensions: 17504
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,264,745
Effective search space: 64501995
Effective search space used: 64501995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)