BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1417.p
         (200 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310248|ref|YP_003774340.1| hypothetical protein Hsero_0915...   107   5e-25

>gi|300310248|ref|YP_003774340.1| hypothetical protein Hsero_0915
           [Herbaspirillum seropedicae SmR1]
          Length = 195

 Score =  107 bits (268), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/203 (36%), Positives = 108/203 (53%), Gaps = 11/203 (5%)

Query: 1   MATLAAPLLEGVVARILTALGVGVVAGAAGEAAKEQARKRQEEAEKAKSAPIARTEAQTK 60
           M   A PLL  + A +L  + +   A AAG AA   +  +   AE+A+S P+A+ +   K
Sbjct: 1   MGFPAIPLLPAISAEVLAWIRLVSSAVAAGGAAAVYSNSKN--AEEAESKPLAQVDV-AK 57

Query: 61  ERKKCPDCTPDRGAPFNRSTAGWSEVSIAYQSRISGMPVGQGFITEWLFSGVTFDGFDSS 120
           + +KC  C PD GA  +R     S++S  YQ+R++G        TEW FSGV FDGF S+
Sbjct: 58  QSEKCKKCPPDGGALVSRKW-NMSDISREYQARVTGFAPN----TEWAFSGVDFDGFRSA 112

Query: 121 QCLLKEAKAKYDQFFDDFGDPQEW---WKGDEPIMAEATAQSLVAKPRPPVQLRWYFMQP 177
           +CLL+EAKA+Y QFF+   D  ++   + G   +  +A  Q  V    PP +L WYFM+ 
Sbjct: 113 ECLLQEAKARYAQFFNQETDTPKFFFSFTGYRKLRKQAEKQGSVTAASPPARLNWYFMEK 172

Query: 178 MSYRFFSKIFSAMLLPIETVFEP 200
                   +F    LPI  +F P
Sbjct: 173 FVADHMKDLFRNDGLPITVIFMP 195


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 575,582
Number of extensions: 22236
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,236,335
Effective search space: 147123865
Effective search space used: 147123865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)