BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1414.p
         (593 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310242|ref|YP_003774334.1| DNA-dependent ATPase terminase ...  1209   0.0  

>gi|300310242|ref|YP_003774334.1| DNA-dependent ATPase terminase
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 593

 Score = 1209 bits (3127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/593 (96%), Positives = 584/593 (98%)

Query: 1   MLDIPEDIKDNIDQATEPRQLARRLYFEGWRISSIARHLKIKRSTVNSWKHRDEWEKVSR 60
           MLDIP DIK++IDQA EPR +ARRLYFEGWRISSIARHLKIKR+TVNSWKHRDEWEKVSR
Sbjct: 1   MLDIPHDIKESIDQAAEPRHVARRLYFEGWRISSIARHLKIKRTTVNSWKHRDEWEKVSR 60

Query: 61  LERVEIALEARIVQLIAKEVKGNGEYKELDALMRQLVQAARVRRYEQPGGNETDLNPKIA 120
           LERVEIALEARIVQLI KEVKGNGEYKELDALMRQLVQAARVRRYEQPGGNETDLNP IA
Sbjct: 61  LERVEIALEARIVQLIGKEVKGNGEYKELDALMRQLVQAARVRRYEQPGGNETDLNPNIA 120

Query: 121 NRNAGPKKKPVRNEFSEEAQQRIVEAFNDSLFDYQKVWYRNGSERTRIILKSRQIGATWY 180
           NRNA PKKKPVRNEFSEEAQQRI+EAFNDSLFDYQKVW+RNGSERTRIILKSRQIGATWY
Sbjct: 121 NRNAAPKKKPVRNEFSEEAQQRIIEAFNDSLFDYQKVWFRNGSERTRIILKSRQIGATWY 180

Query: 181 FAREALIDAIQTGRNQIFLSASKSQAHVFKQYIIQFAKDACGVELSGDPIVLPNGAHLYF 240
           FAREALIDAIQTGRNQIFLSASKSQAHVFKQYIIQFAKDACGVELSGDPIVLPNGAHLYF
Sbjct: 181 FAREALIDAIQTGRNQIFLSASKSQAHVFKQYIIQFAKDACGVELSGDPIVLPNGAHLYF 240

Query: 241 LGTNARTAQGYHGNFYFDEFFWTHNFTELNKVASGMALHKKWRKTYFSTPSATTHQAYPF 300
           LGTNARTAQGYHGNFYFDEFFWTHNFTELNKVASGMALHKKWRKTYFSTPSATTHQAY F
Sbjct: 241 LGTNARTAQGYHGNFYFDEFFWTHNFTELNKVASGMALHKKWRKTYFSTPSATTHQAYSF 300

Query: 301 WTGEAFNKRRAKGDKVNIDVSHKRLSSGFTGEDKIWRQIVTIMDAAAGGCDLFDIDELRD 360
           WTGEAFNKRRAKGDKVNIDVSHKRLSSGFTGEDKIWRQIVTIMDAAAGGCDLFDIDELRD
Sbjct: 301 WTGEAFNKRRAKGDKVNIDVSHKRLSSGFTGEDKIWRQIVTIMDAAAGGCDLFDIDELRD 360

Query: 361 FEYSPDQFDNLLMCNFIDDSASVFPLADLQRGMVDSWVDWDDYKPFTARPFGHRPVWIGY 420
           FEYSPDQFDNLLMCNFIDDSASVFPLADLQRGMVDSWVDWDDYKPFTARPFGHRPVWIGY
Sbjct: 361 FEYSPDQFDNLLMCNFIDDSASVFPLADLQRGMVDSWVDWDDYKPFTARPFGHRPVWIGY 420

Query: 421 DPSLTGDSAGCSVIAPPLVPGGNFRILERHQWRGKDFSEQAALIKEMCGRYNVQYIGIDT 480
           DPSLTGDSAGCSVIAPPL+PGGNFRILERHQWRGKDF+EQAALIKEMCGRYNVQYIGIDT
Sbjct: 421 DPSLTGDSAGCSVIAPPLIPGGNFRILERHQWRGKDFAEQAALIKEMCGRYNVQYIGIDT 480

Query: 481 TGMGVGVFPLVKQFFPAVTPISYSPEVKTRMVLKAQNIIRSGRLQFDAGWTDIAQSFMAI 540
           TGMGVGV+PLVKQFFP VT ISYSPEVKTRMVLKAQNIIRSGRLQFDAGWTDIAQSFMAI
Sbjct: 481 TGMGVGVYPLVKQFFPGVTAISYSPEVKTRMVLKAQNIIRSGRLQFDAGWTDIAQSFMAI 540

Query: 541 RKILTPSGRAVTYDAGRSEETGHADLAWSVMHALDYEPFEGTTANNTSSMEFF 593
           RKILTPSGRAVTYDAGRSEETGHADLAWSVMHALDYEPFEGTTANNTSSMEFF
Sbjct: 541 RKILTPSGRAVTYDAGRSEETGHADLAWSVMHALDYEPFEGTTANNTSSMEFF 593


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,937,955
Number of extensions: 82677
Number of successful extensions: 168
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 502
Effective length of database: 1,188,985
Effective search space: 596870470
Effective search space used: 596870470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)