BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1413.p
         (280 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310241|ref|YP_003774333.1| phage-related capsid scaffold b...   512   e-146

>gi|300310241|ref|YP_003774333.1| phage-related capsid scaffold
           bacteriophage protein [Herbaspirillum seropedicae SmR1]
          Length = 280

 Score =  512 bits (1319), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 246/280 (87%), Positives = 263/280 (93%)

Query: 1   MATKSKFFRVATEGATTDGRSITREQIQQMADSYNVKTYGARVWVEHLRSLLPDGPFKAY 60
           MATKSKFFRVATEGATTDGRSI+REQIQQMAD+YNVKTYGARVWVEHLRSLLPDGPFKAY
Sbjct: 1   MATKSKFFRVATEGATTDGRSISREQIQQMADNYNVKTYGARVWVEHLRSLLPDGPFKAY 60

Query: 61  GDVLSLKAEEVDTENGKRLALFAQIEPTPALIAMNKDRQKIYTSIELADKFADTGSSYLV 120
           GDVL+LKAEEVDT+ GKRLALFAQIEPTPAL+AMNKDRQKIYTSIELADKFAD  S+YLV
Sbjct: 61  GDVLALKAEEVDTDAGKRLALFAQIEPTPALVAMNKDRQKIYTSIELADKFADISSAYLV 120

Query: 121 GLAVTDSPASLGTEILQFSATNPKASPFTPRKLEPENLFSEAIEAKIEFEEDGPSVAETI 180
           GLAVTDSPASLGTEILQFSA+NPKASPFTPRKL+PENLFSE +E KIEFE+DGPSVAETI
Sbjct: 121 GLAVTDSPASLGTEILQFSASNPKASPFTPRKLKPENLFSEGVETKIEFEDDGPSVAETI 180

Query: 181 KQLFSRIGGGEKKADAQHADVVAAMTAVAEKVGEFAQATAQTSKDVAEAVARLEKLEKRV 240
           KQ+FSR GG EKKADAQHADVVAAMTAVAEKVGEFAQ   Q +KD AEAV RLEKLEKRV
Sbjct: 181 KQIFSRFGGSEKKADAQHADVVAAMTAVAEKVGEFAQVATQAAKDAAEAVTRLEKLEKRV 240

Query: 241 GDESTTAERFRQTVNLTDKSNVQRPPATGGGSSGAALTEF 280
           GDEST AE+FRQT+NLTDK++VQRPPATGG +SG  LTEF
Sbjct: 241 GDESTAAEQFRQTINLTDKNDVQRPPATGGSNSGVVLTEF 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.127    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 787,384
Number of extensions: 31535
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,222,130
Effective search space: 239537480
Effective search space used: 239537480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 130 (54.7 bits)