BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1401.p
         (307 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310228|ref|YP_003774320.1| phage P2 baseplate assembly pro...   513   e-147
gi|300309546|ref|YP_003773638.1| bacteriophage tail fiber protei...    74   2e-14
gi|300309553|ref|YP_003773645.1| bacteriophage tail fiber protei...    64   2e-11

>gi|300310228|ref|YP_003774320.1| phage P2 baseplate assembly
           protein [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  513 bits (1321), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 271/307 (88%), Positives = 289/307 (94%)

Query: 1   MSSPIDLSLLPAPQVLESLDYETILANRKAAVLALLPEDQREAAANVLSLESEPATKLLQ 60
           MSSPIDL+LLPAPQVLE+LD+ETILA RKAAVLALLPEDQR+AAA VL+LESEP+TKLLQ
Sbjct: 1   MSSPIDLTLLPAPQVLETLDFETILATRKAAVLALLPEDQRDAAAKVLALESEPSTKLLQ 60

Query: 61  ENAYQELLLRNRVNDAAKAVMLAFAIGPDLDQIGANTNVKRLVLVEADPDASPPVAEVLE 120
           ENAYQELLLRNRVNDAAKA+MLAFA+  DLDQIGAN NVKRLVLV ADPDA PPVAEVLE
Sbjct: 61  ENAYQELLLRNRVNDAAKAIMLAFAMDSDLDQIGANNNVKRLVLVPADPDAQPPVAEVLE 120

Query: 121 GDDAYRLRIQEAPDALSTAGPRNAYEFHARSADGRVLDARAVSPAPCEVVVAILANSDDW 180
           GDDAYRLRIQEAPDALS AGPRNAYEFHARSADGRV+DARA+SPAPCEVVVA+LAN++DW
Sbjct: 121 GDDAYRLRIQEAPDALSVAGPRNAYEFHARSADGRVMDARAISPAPCEVVVAVLANTEDW 180

Query: 181 QAPADLLQTVYAALSAEDVRPLGDLVSVVQAQVTDYELEAVVYVEKGPEASIALNAARTN 240
           QAPADLL TV AALSAEDVRPLGDLV+VVQ  VTDYELEAVVYVEKGPEA+IALNAAR N
Sbjct: 181 QAPADLLATVDAALSAEDVRPLGDLVNVVQGAVTDYELEAVVYVEKGPEAAIALNAARAN 240

Query: 241 AAVMAKPLRPLGYSVYRNAYVAALKVEGVRNVHVKSPAANILCGRTQAARCTGIRITAEV 300
           AA ++KPLRPLGYSVYRNAYVAALKVEGVRNV VKSPAA+ILCGRTQAARCT IRI AEV
Sbjct: 241 AAAISKPLRPLGYSVYRNAYVAALKVEGVRNVIVKSPAADILCGRTQAARCTAIRIKAEV 300

Query: 301 LEEVDRV 307
           LEEVD V
Sbjct: 301 LEEVDDV 307


>gi|300309546|ref|YP_003773638.1| bacteriophage tail fiber protein
           [Herbaspirillum seropedicae SmR1]
          Length = 374

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/179 (36%), Positives = 95/179 (53%), Gaps = 5/179 (2%)

Query: 120 EGDDAYRLRIQEAPDALSTAGPRNAYEFHARSADGRVLDARAVSPAPCEVVVAILANSDD 179
           E D+ ++ RI  AP+  S AG   AY FHARSA   V+D   VSP+P   VV +     D
Sbjct: 193 ESDEQFKERIVLAPEQFSNAGSVGAYHFHARSAHPEVIDVAVVSPSPG--VVHLHPLVKD 250

Query: 180 WQAPADLLQTVYAALSAEDVRPLGDLVSVVQAQVTDYELEAVVYVEKGPEASIALNAART 239
               A +   V AA +++ VRPL D V V+   V DY + A + +  G +A +A+  AR 
Sbjct: 251 GLPSAAVKAAVLAACNSDRVRPLTDEVKVLDPVVVDYAITARLTLLAGADAGVAVAEARK 310

Query: 240 NAAVMAKPLRP-LGYSVYRNAYVAALKVEGVRNVHVKSPAANILCGRTQAARCTGIRIT 297
            A  + + L+  LG  V R+  ++A+KV GV +V +     +I+       RCTGI I+
Sbjct: 311 AAEQLRQRLQSGLGRDVVRDELISAMKVYGVYSVGLV--GEDIVLEEHHWPRCTGIHIS 367


>gi|300309553|ref|YP_003773645.1| bacteriophage tail fiber protein
           [Herbaspirillum seropedicae SmR1]
          Length = 388

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 87/192 (45%), Gaps = 16/192 (8%)

Query: 120 EGDDAYRLRIQEAPDALSTAGPRNAYEFHARSADGRVLDARAVSPAPCEVVVAILANSDD 179
           E D+  R RI  AP+  S A    AY +H  S+   V+D  AV  A  EV    L +++ 
Sbjct: 190 EDDEHLRQRIVLAPEQFSNAASVGAYRYHVLSSHPDVIDV-AVLGAQMEVRNGQLVSTNG 248

Query: 180 WQAPADLLQ--------------TVYAALSAEDVRPLGDLVSVVQAQVTDYELEAVVYVE 225
                 LL                V AA +A+ VRPL D V V   Q  D+ L A + + 
Sbjct: 249 IPPGVVLLHPLTRQGLPGEQVKAAVLAACNADKVRPLTDHVQVRDPQPVDFALRAELTLY 308

Query: 226 KGPEASIALNAARTNAAVMAKPLRP-LGYSVYRNAYVAALKVEGVRNVHVKSPAANILCG 284
              +A+  L  A+  A  +   L+  LG  V  +  V AL V GV +V + +P  +++ G
Sbjct: 309 TSADAAATLQRAQEAAEALRDRLQSRLGSDVVCSQLVQALHVAGVYSVKLLAPTTDLVLG 368

Query: 285 RTQAARCTGIRI 296
             Q  RCTG+ +
Sbjct: 369 PAQWPRCTGVSL 380


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 877,647
Number of extensions: 34226
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 3
Length of query: 307
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,217,395
Effective search space: 270261690
Effective search space used: 270261690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)