BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1400.p
         (206 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310227|ref|YP_003774319.1| bacteriophage P2-related tail f...   329   9e-92
gi|300309545|ref|YP_003773637.1| tail-related protein [Herbaspir...    59   2e-10

>gi|300310227|ref|YP_003774319.1| bacteriophage P2-related tail
           formation protein [Herbaspirillum seropedicae SmR1]
          Length = 211

 Score =  329 bits (844), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 157/206 (76%), Positives = 175/206 (84%)

Query: 1   VYNPVPTLPPNTTPLERAMARACAALADTPAPIRDLWNADRCPVDLLPFLAWSFSVDRWD 60
           +YNPVPTLPPNTTPLERA+ARACA LA+TP P+RDLW+ DRCPV+LLPFLAWSFSVDRWD
Sbjct: 1   MYNPVPTLPPNTTPLERALARACAELAETPVPLRDLWSPDRCPVELLPFLAWSFSVDRWD 60

Query: 61  DTWPESIKRGTIKAARYIHQHKGTIAAVRGVVESLGYIIKIREWWQTEPRGQRGTFALEV 120
           D W ESIKRGTIKAARYIHQHKGTIAAVRGVVESLGY+IKI EWWQTEPRG+RGTFALEV
Sbjct: 61  DGWSESIKRGTIKAARYIHQHKGTIAAVRGVVESLGYLIKITEWWQTEPRGKRGTFALEV 120

Query: 121 GVLDAGITDEMFLEMERLIDDAKPLSRHLTGLRIHLEVRGSLFVGTFIQLGETVTVYPWT 180
           GVLD+GITD MFLEMERLIDDAKPLSRHL GL +HLEVRG+  +     +GE +TVYP++
Sbjct: 121 GVLDSGITDAMFLEMERLIDDAKPLSRHLIGLALHLEVRGTTAIAVGAYMGEEITVYPYS 180

Query: 181 PDSIETTGGPFIGCAAHFIETMTIYP 206
           PD IE           H IE+ TI+P
Sbjct: 181 PDPIEVQLAQGFYARLHLIESTTIFP 206


>gi|300309545|ref|YP_003773637.1| tail-related protein
           [Herbaspirillum seropedicae SmR1]
          Length = 249

 Score = 59.3 bits (142), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 17/178 (9%)

Query: 8   LPPNTTPLERAMARACAALADTPAPI----RDLWNADRCPVDLLPFLAWSFSV---DRWD 60
           LPP     + A  RA   LA  PA +      L++  R P   L  LA   ++     WD
Sbjct: 9   LPPGLR--QDASLRALETLAARPAALDLQAAVLYDFARVPASALIHLAEQLNMLGDAGWD 66

Query: 61  DTWPESIKRGTIKAARYIHQHKGTIAAVRGVVESLGYIIKIREWWQTEPRGQRGTFALEV 120
               ++ KR  ++ A  +H+ KGT  AV+  +E LG    + EW+Q++PRG+  TF+++ 
Sbjct: 67  LADTDAKKRALLREAIALHRIKGTPYAVKRALELLGVRASVTEWFQSQPRGRAHTFSVDA 126

Query: 121 GVLDA-----GITDEMFLEMERLIDDAKPLSRHLT---GLRIHLEVRGSLFVGTFIQL 170
            V         I      ++ R++   KP SRH T   GL +   +R ++   +  QL
Sbjct: 127 LVTGQPAGAPAIDARRSEQIRRVVSFWKPASRHFTLRLGLGMQTRLRAAVVFSSQQQL 184


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 606,266
Number of extensions: 24863
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 2
Length of query: 206
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,236,335
Effective search space: 154541875
Effective search space used: 154541875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)