BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1399.p
         (402 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310226|ref|YP_003774318.1| bacteriophage variable tail fib...   216   2e-57
gi|300310224|ref|YP_003774316.1| phage-related hypothetical prot...   202   3e-53

>gi|300310226|ref|YP_003774318.1| bacteriophage variable tail fibre
           protein [Herbaspirillum seropedicae SmR1]
          Length = 578

 Score =  216 bits (551), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 98/164 (59%), Positives = 126/164 (76%), Gaps = 4/164 (2%)

Query: 3   TYFSIPTEIGEAKIANALALGVPLKLTHMGVGDGNGVLPVPDRKQVALVREQRRAPINTL 62
            ++   TEIGEAK A A ALGVP +   MGVGDGNG +PVPD+K+  L+ E RRAP+N +
Sbjct: 5   NFYCTLTEIGEAKDAKAKALGVPFRFAEMGVGDGNGTVPVPDKKRTKLLNEVRRAPLNQV 64

Query: 63  DKDPKNASQIIIEQVLPADVGGWWVREIGVYDEAGDLCAVANCPPSYKPVITEGAGKDQV 122
             DPKN +Q+I+EQV+P +VGGWW+RE G+YDE GDL A+ NCPP+YKP ++EG+GK QV
Sbjct: 65  SLDPKNGNQVIVEQVIPENVGGWWIREQGLYDEDGDLVAIGNCPPTYKPQMSEGSGKTQV 124

Query: 123 VRVVLLVASTAAVELKIDPAVVLATRKYADEAIVAYAAPKGHTH 166
           +R+V++V S A VELKIDP+VVLATR Y +    +YAA K HTH
Sbjct: 125 IRMVIVVTSAATVELKIDPSVVLATRSYLE----SYAAQKVHTH 164


>gi|300310224|ref|YP_003774316.1| phage-related hypothetical protein
           [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score =  202 bits (515), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/211 (52%), Positives = 135/211 (63%), Gaps = 23/211 (10%)

Query: 215 FFTAIPAQKVSDVIMVKGIGMMEWIDIAGAGEFHGYRSLRCGALEFGTTTAPRPYEADLV 274
           FF AIPA+K + +I V G+G +EW+++ GAG F GYR+LRCGALEFGTTT PR YEADLV
Sbjct: 14  FFQAIPAEKAAALIFVPGLGWLEWVEVTGAGAFKGYRTLRCGALEFGTTTVPRSYEADLV 73

Query: 275 GGLGSKTGQASIWAWAQQNGHAVAAATWTTKVFKFADVDANTFRFPDLRDVFARFAGTDA 334
           GGL SKT QAS+WAWAQQNGH VAAA WT K FKFADVD   FR PDLR+V  RF GT+A
Sbjct: 74  GGLASKTAQASLWAWAQQNGHVVAAAAWTAKEFKFADVDDTYFRLPDLRNVGTRFTGTNA 133

Query: 335 DSGQAVVLGSYKADTLKSHYHSVGK-----------PGTVQG--GTGGSAMQGGGSE--- 378
           D+     +GS++AD L++   S  +           P TV G  G G  A  G  ++   
Sbjct: 134 DTAGVRGIGSFQADALQNITGSFKRSASSGGLVENNPATVTGAFGLGSGATPGPSADSGS 193

Query: 379 ----IFSGT---TGSAETAPKHTAFMPRIHL 402
               IF  +     + ET   +TAF PRIH+
Sbjct: 194 YVPVIFDASRVARTATETRHANTAFAPRIHI 224


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,209,737
Number of extensions: 49258
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 2
Length of query: 402
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 315
Effective length of database: 1,207,925
Effective search space: 380496375
Effective search space used: 380496375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)