BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1397.p
         (392 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310222|ref|YP_003774314.1| bacteriophage major tail sheath...   730   0.0  
gi|300309562|ref|YP_003773654.1| bacteriophage contractile tail ...   137   2e-33

>gi|300310222|ref|YP_003774314.1| bacteriophage major tail sheath
           protein [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/391 (91%), Positives = 374/391 (95%)

Query: 1   MAADYHHGVRVIEINEGTRPIRTVSTAVIGVIVTADDADADAFPLDTAVLITNVVAAQAK 60
           MA DYHHGVRVIEINEGTRPIRT+STAVIGVIVTADDADA+AFPLDTAVLITNVV+AQAK
Sbjct: 1   MATDYHHGVRVIEINEGTRPIRTISTAVIGVIVTADDADAEAFPLDTAVLITNVVSAQAK 60

Query: 61  AGKRGTMRRVLEAIAAQAKPLVVLVRVAEGADEAEQTTLVIGGVSPEGHYTGAKALLAAQ 120
           AGK GTMRRVLEAIAAQAKPLVVLVRVAE   EAEQT+LVIGGVS EG YTG KALLAAQ
Sbjct: 61  AGKTGTMRRVLEAIAAQAKPLVVLVRVAEAESEAEQTSLVIGGVSAEGRYTGVKALLAAQ 120

Query: 121 SKLGIKPRILGAPGLDTKAVTNALASLAQTLRAFVYASCWNCATVVAATAYRSEFGQREV 180
           +KLGIKPRI+GAP LDTKAVTNALAS+AQTLRAFVYA CWNCAT  AATAYR+EFGQREV
Sbjct: 121 AKLGIKPRIIGAPFLDTKAVTNALASIAQTLRAFVYAYCWNCATAAAATAYRAEFGQREV 180

Query: 181 MLIWPEFVSWDTTTSADVSISAVAYALGLRAKIDEQTGWHKTLSNVVVNGPTGISRDVFW 240
           ML+WPEFVSWDT TS D +ISAVA+ALGLRAKIDEQTGWHKTLSNVVVNGPTGISRDVFW
Sbjct: 181 MLLWPEFVSWDTATSKDANISAVAFALGLRAKIDEQTGWHKTLSNVVVNGPTGISRDVFW 240

Query: 241 DLQDPATDAGVLNAKEVTTLINMSGYRFWGSRTCEIQGGFFPFENYTRTAQVLADTIAEA 300
           DLQDPATDAGVLNAKEVTTLINMSGYRFWGSRTCE+QGG+FPFENYTRTAQVLADTIAEA
Sbjct: 241 DLQDPATDAGVLNAKEVTTLINMSGYRFWGSRTCEVQGGYFPFENYTRTAQVLADTIAEA 300

Query: 301 HMVYVDLPMTPSLVKDLVASINAKFRSLKASGYIIDGEAWFDEQFNDKDTLKTGKLTIDY 360
           H+VYVDLPMTPSLVKDLVASINAKFRSLKASGYIIDGEAWFD+++NDKDTLK GKLTIDY
Sbjct: 301 HLVYVDLPMTPSLVKDLVASINAKFRSLKASGYIIDGEAWFDDKYNDKDTLKAGKLTIDY 360

Query: 361 GYTPVPPVENLLFQQRITDQYLADFAARVAA 391
            YTPVPPVENLLFQQRITDQYLADFAARVAA
Sbjct: 361 SYTPVPPVENLLFQQRITDQYLADFAARVAA 391


>gi|300309562|ref|YP_003773654.1| bacteriophage contractile tail
           sheath protein [Herbaspirillum seropedicae SmR1]
          Length = 480

 Score =  137 bits (344), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/295 (32%), Positives = 139/295 (47%), Gaps = 12/295 (4%)

Query: 100 VIGGVSPEGHYTGAKALLAAQSKLGIKPRILGAPGLDTKAVTNA-LASLAQTLRAFVYAS 158
           VIG V   G   G KAL  + +  G  P+IL AP   + A  +A L + A  LRA  +  
Sbjct: 179 VIGSVGASGQRLGMKALRDSYALFGFYPKILIAPVFASLASVSAELIATATALRAISFID 238

Query: 159 CWNCATVVAATAYRSEFGQ-------REVMLIWPEFVSWDTTTSADVSISAVAYALGLRA 211
                T   A   R   G          V L +P   ++D +   D      ++A G ++
Sbjct: 239 APIGVTPQQAITGRGPAGSINFNTSSDRVGLCYPYLKAFDASVGYDRLRPLSSFAAGAQS 298

Query: 212 KIDEQTGWHKTLSNVVVNGPTGISRDVFWDLQDPATDAGVLNAKEVTTLINM--SGYRFW 269
           + D+  G+  +LSN  + G TG+ R +   + DP  +A +LNA  V T+ N   +G R W
Sbjct: 299 RKDQDNGYWWSLSNTELLGATGVERPIDAMINDPNCEANLLNAAGVITVFNSFGTGLRIW 358

Query: 270 GSRTCEIQGGFFP--FENYTRTAQVLADTIAEAHMVYVDLPMTPSLVKDLVASINAKFRS 327
           G+R+        P  F    R A V+A+++    + Y D P+  +LV D+V S N   R 
Sbjct: 359 GNRSAAFPASTHPKNFLCVRRVADVIAESLEYFTLQYSDRPLDNALVDDVVESGNRFLRK 418

Query: 328 LKASGYIIDGEAWFDEQFNDKDTLKTGKLTIDYGYTPVPPVENLLFQQRITDQYL 382
           LKA G IIDG AW+D   ND   L  G LTI Y + P  P E + ++  I   YL
Sbjct: 419 LKADGAIIDGRAWYDPAQNDPTELAAGHLTITYDFMPPTPAERVSYRASINIDYL 473


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,142,459
Number of extensions: 45498
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 2
Length of query: 392
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 305
Effective length of database: 1,207,925
Effective search space: 368417125
Effective search space used: 368417125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)