BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1393.p (874 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310219|ref|YP_003774311.1| bacteriophage-related tail tran... 1583 0.0 gi|300309559|ref|YP_003773651.1| bacteriophage protein gp18 prot... 67 8e-12 >gi|300310219|ref|YP_003774311.1| bacteriophage-related tail transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 874 Score = 1583 bits (4099), Expect = 0.0, Method: Compositional matrix adjust. Identities = 807/874 (92%), Positives = 845/874 (96%) Query: 1 MANELKMQVVFSMMEKITAPLKKIASGAKDTGKALKDTSDRLRELNKQQNDLNGLRELHQ 60 MANELKMQVVFSMMEKITAPLKKIA GA+DTGKALKDTSDRLRELNKQQ+DLNGLR+LHQ Sbjct: 1 MANELKMQVVFSMMEKITAPLKKIAGGARDTGKALKDTSDRLRELNKQQSDLNGLRDLHQ 60 Query: 61 GMRKTSAELATAQQRVTDLAAKMKAAENPTRAMTREFNAAVRSVKSLQEASEKQGIQYRA 120 MRKTSAELATAQQRV++LAA+MKAAENPTRAMTREFNAAVRSVKSLQ+ASEKQG QYRA Sbjct: 61 SMRKTSAELATAQQRVSELAARMKAAENPTRAMTREFNAAVRSVKSLQDASEKQGAQYRA 120 Query: 121 LRERLTDAGIGSRQLANAQTWLKNSIAATNAELADQQKKLTASHRQQQVMANARQRADKL 180 LRERL DAGIGSRQLANAQTWLKNSIAATNAELADQQKKL AS+RQQQVMANARQRADKL Sbjct: 121 LRERLADAGIGSRQLANAQTWLKNSIAATNAELADQQKKLAASNRQQQVMANARQRADKL 180 Query: 181 RSTAGGLAAAGVGATASGAAVGAPLLAGLTEAKHYETENGRVRALGLGPAATAEAIKFAR 240 RSTAGGLAAAGVGATA+GAA+GAP LAGL EAKHYETENGRVRALGLGPAATAEAIKFAR Sbjct: 181 RSTAGGLAAAGVGATAAGAAMGAPALAGLREAKHYETENGRVRALGLGPAATAEAIKFAR 240 Query: 241 EMKTYGTSQLDNLQLLRDGITAFGDTHHAEMVAPMMAKMKFGNHAFYGEEEGAENERKFM 300 +MKTYGTSQLDNLQLLRDGITAFGDTHHAEMVAPMMAKMKFGNHAFYGE EGAENERKFM Sbjct: 241 QMKTYGTSQLDNLQLLRDGITAFGDTHHAEMVAPMMAKMKFGNHAFYGEAEGAENERKFM 300 Query: 301 DMLKVIEMRNGTKDIGTFSKQANMVQQVLTATGGRVGPGEWLNLIKTGGIAAKGLKDESF 360 DMLKVIEMRNGTKDIGTFSKQANMVQQVLTATGGRVGPGEWLNLIKTGGIAAKG+KDE+F Sbjct: 301 DMLKVIEMRNGTKDIGTFSKQANMVQQVLTATGGRVGPGEWLNLIKTGGIAAKGIKDEAF 360 Query: 361 YYQMESLVQEMGGNRVGTSMMSAYQNLYQGRTTKRSIAMLSDLGLIGDQSKVKHDKAGQV 420 YYQMESLVQEMGGNRVGTSMMSAYQNLYQGRTTKRSI ML+DLGLIGD SKV+HDKAGQV Sbjct: 361 YYQMESLVQEMGGNRVGTSMMSAYQNLYQGRTTKRSIGMLADLGLIGDTSKVRHDKAGQV 420 Query: 421 SFLNPGAIKGADLFRENQFEWMEKVLLPQLASKGITDEKGILDAIGGIFSNRTAAQLFST 480 S+LNPGAIKGADLFRENQFEWMEKVLLPQLASKGITDEKGILDAIGGIFSNRTAAQLFST Sbjct: 421 SYLNPGAIKGADLFRENQFEWMEKVLLPQLASKGITDEKGILDAIGGIFSNRTAAQLFST 480 Query: 481 MYQQRTQIHKNEKLNRGAANIDELDKLGRETASGKELETLAKVADLKLEMGTKILPLYAS 540 MYQQR QIHKNEKLNRGAANIDELDKLGR+TASGKELETL+KVADLKLE+G+KILPLYA+ Sbjct: 481 MYQQRAQIHKNEKLNRGAANIDELDKLGRDTASGKELETLSKVADLKLELGSKILPLYAA 540 Query: 541 GLQMAANAVQALSGFMERNPTTAKAMIVGFSAIAAILVVMGPLMLALASVIGPYAMLHVL 600 GL+MA NAVQAL+GFMERNP TAKAMIVGFSAIA I+VVMGPLMLALASVIGPYAMLHVL Sbjct: 541 GLEMATNAVQALTGFMERNPATAKAMIVGFSAIAGIMVVMGPLMLALASVIGPYAMLHVL 600 Query: 601 FAKIGLQGNLLMPILRGIGTVFMWLGRVFLMNPIGLAITAIAVAAYLLYRNWEPIAGFFS 660 FAKIGLQGNLLMPILRGIGTVFMWLGRVFLMNPIGLA+TAIA AAYLLYRNWEPIAGFF Sbjct: 601 FAKIGLQGNLLMPILRGIGTVFMWLGRVFLMNPIGLAVTAIAGAAYLLYRNWEPIAGFFG 660 Query: 661 NLWQQVRSAFAGGLAGVAALIVNWSPTGLFYQAFAGVLGWFGIELPAKFTEFGAMMLRGL 720 NLWQQVR+AFAGGL GVAALI+NWSP G+FYQAFAGVL WFGIELPAKF++FGAM+L+GL Sbjct: 661 NLWQQVRAAFAGGLGGVAALIINWSPLGIFYQAFAGVLSWFGIELPAKFSDFGAMILQGL 720 Query: 721 VNGITSGIGAVKDAVLGAGASVIGWFKEKLDIHSPSRVFAELGDYTMQGLAVGLNRGQDG 780 +GIT +GAVKDAVLGAG+SVIGWFKEKLDIHSPSRVFAELGDYTMQGLAVGLNRGQDG Sbjct: 721 ASGITRALGAVKDAVLGAGSSVIGWFKEKLDIHSPSRVFAELGDYTMQGLAVGLNRGQDG 780 Query: 781 PLSTVSSLAGKLASAGAAVAIGAGSVPAMAFDSRPPISGGSAQPVVYQGDTVQIIIQPAP 840 PLS VS LAGKLASAGAAVAIGAGS+PAMAFDSRPP+S S QPVV+QGDTVQIIIQP P Sbjct: 781 PLSAVSGLAGKLASAGAAVAIGAGSMPAMAFDSRPPLSAASTQPVVHQGDTVQIIIQPLP 840 Query: 841 GMDEQAIARAVATELDRRDRMKASRQRSNLADWD 874 GMDEQAIARAVA ELDRRDRMKASRQRSNLADWD Sbjct: 841 GMDEQAIARAVAVELDRRDRMKASRQRSNLADWD 874 >gi|300309559|ref|YP_003773651.1| bacteriophage protein gp18 protein [Herbaspirillum seropedicae SmR1] Length = 779 Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 88/342 (25%), Positives = 132/342 (38%), Gaps = 92/342 (26%) Query: 525 DLKLEMGTKILPLYASGLQMAANAVQALSGFMERNP---TTAKAMIVGFSAIA----AIL 577 DLK+ +G ++P + L + V+ L+GF++ +P T ++VG +A++ AI Sbjct: 412 DLKIALGNALIPAMQALLPIVTQLVRGLTGFIDAHPKLAATIGTLVVGATALSFAGGAIK 471 Query: 578 VVMGPLMLALASVI-------------------------GPYAMLHVLFAKIG-LQGNLL 611 VV G L LA + GP L K G + G L Sbjct: 472 VVRGT-ALGLAGRMSASDDEAPPSRMGRRAARGRRIKFGGPLPKLGAPTVKPGGIIGKGL 530 Query: 612 MPILRGIGTV------------------FMWL-------GRVFLMNPIGLAITAIAVAAY 646 +L G+G + F L G NPIG+ I + A Sbjct: 531 RGMLSGVGRLAGVAARGLRLLGSAGRVAFGLLSVGARGFGMALTANPIGMVIRLVFKLAE 590 Query: 647 LLYRNWEPIAGFFSNLWQQVRSAFAGGLAGVAALIVNWSPTGLFYQAFAGVLGWFGIELP 706 +++RNW PI+ F L F G +AG+ + P Sbjct: 591 VIWRNWRPISRFAGTL-------FNGLMAGIRRVKNFLDP-------------------- 623 Query: 707 AKFTEFGAMMLRGLVNGITSGIGAVKDAVLGAGASVIGWFKEKLDIHSPSRVFAELGDYT 766 F + G ++ GLV GI G V + + G+++ FK L I SPSRVF G Sbjct: 624 --FLKIGGQIIDGLVGGIRQGWTKVVETISKLGSAIRDKFKSLLGISSPSRVFMGFG--- 678 Query: 767 MQGLAVGLNRGQDGPLSTVSSLAGKLASAGAAVAIGAGSVPA 808 + G +G L V +G++A A A+ AGS PA Sbjct: 679 -ANIGEGAQQGIQSKLGAVRQASGQMAGVAKASAVLAGSTPA 719 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,396,324 Number of extensions: 95577 Number of successful extensions: 478 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 472 Number of HSP's successfully gapped: 2 Length of query: 874 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 780 Effective length of database: 1,174,780 Effective search space: 916328400 Effective search space used: 916328400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)