BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1381.p
         (206 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310874|ref|YP_003774966.1| transmembrane protein [Herbaspi...   384   e-108

>gi|300310874|ref|YP_003774966.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  384 bits (987), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/209 (93%), Positives = 198/209 (94%), Gaps = 4/209 (1%)

Query: 1   MKNLSPQ---PPRKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMG 57
           MK  SPQ   PPRKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMG
Sbjct: 1   MKTPSPQAPKPPRKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMG 60

Query: 58  SASSLDHILDAVAIPGAIRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRM 117
           +ASSLDHILDAVAIPGAIRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRM
Sbjct: 61  NASSLDHILDAVAIPGAIRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRM 120

Query: 118 NLEGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIA 177
           NLEGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIA
Sbjct: 121 NLEGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIA 180

Query: 178 FLLSAMAIAYCDRLMVHP-SEPSAPSDKP 205
           FL SAMAIAYCDRLM+HP +    PSDKP
Sbjct: 181 FLFSAMAIAYCDRLMIHPGAHGDEPSDKP 209


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 641,845
Number of extensions: 23883
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,236,335
Effective search space: 154541875
Effective search space used: 154541875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)