BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1377.p
         (269 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310868|ref|YP_003774960.1| ferredoxin-NADP+ reductase [Her...   436   e-124

>gi|300310868|ref|YP_003774960.1| ferredoxin-NADP+ reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 269

 Score =  436 bits (1122), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/269 (80%), Positives = 245/269 (91%)

Query: 1   VASTSSVSIDAYSEKASCERLLWVHRWTDKLLSFRTTRPAGYRFTAGQFARLGLEIEGEV 60
           ++S S+VSIDAYSEKASCERLLWVHRWTDKLLSFRTTRPAGYRFTAGQFARLGLEI+G+V
Sbjct: 1   MSSASNVSIDAYSEKASCERLLWVHRWTDKLLSFRTTRPAGYRFTAGQFARLGLEIDGQV 60

Query: 61  VSRAYSITSAEGADYLEYYAIIVPEGKFTSRLNQLEPGDPIWVEKLSYGFLTADRFTDGK 120
           VSRAYSITSAE  D LEYYAIIVP G+FTSRL+ L+PGDP+WVEKLSYGF+TADRF+DG+
Sbjct: 61  VSRAYSITSAEHEDVLEYYAIIVPGGQFTSRLDALQPGDPVWVEKLSYGFMTADRFSDGR 120

Query: 121 QLWMLATGTGLGPYVSILQQPEVWRRFDDLVVVHGVRQREELAYADTFAQLRQQAGQQGL 180
           QLWMLATGTGLGPYVSILQQPEVW+RF+DLV+VHGVRQ  ELAYAD FAQLRQQA  QG 
Sbjct: 121 QLWMLATGTGLGPYVSILQQPEVWQRFEDLVLVHGVRQCAELAYADKFAQLRQQAAAQGW 180

Query: 181 PARLHLLRCVTRETDLPQAPGWLTGRITNLLKEGALERACGVALNLEQSRVMACGNPDMV 240
           PARLH LRCVTRE  LP +PG L GRIT+LL+ G LE+A G++L ++ +RVMACGNP+MV
Sbjct: 181 PARLHSLRCVTREEVLPSSPGLLAGRITDLLRGGQLEQAAGLSLTVDDARVMACGNPEMV 240

Query: 241 TELRELLRERGMTPLRRTGGGQFVTEDYW 269
           TE+RELLR+RGM+PLRR GGGQFVTEDYW
Sbjct: 241 TEVRELLRQRGMSPLRRAGGGQFVTEDYW 269


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 849,215
Number of extensions: 33946
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,222,130
Effective search space: 226094050
Effective search space used: 226094050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)