BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1376.p (591 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310867|ref|YP_003774959.1| outer membrane lipoprotein [Her... 1040 0.0 gi|300311501|ref|YP_003775593.1| outer membrane /protective OMA8... 65 1e-11 >gi|300310867|ref|YP_003774959.1| outer membrane lipoprotein [Herbaspirillum seropedicae SmR1] Length = 588 Score = 1040 bits (2690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/591 (84%), Positives = 538/591 (91%), Gaps = 3/591 (0%) Query: 1 MTWTRSLAIAFLWCAADTAYAAYQVQIEAPAPVQSLLKDFLDISRYQDRDDISDEQLKFM 60 M WTRSLAI LWCAA+ A AAYQV IEAP PVQSLLKDFLD+SRYQDRDDISDEQLKFM Sbjct: 1 MKWTRSLAITLLWCAAEPAIAAYQVDIEAPKPVQSLLKDFLDLSRYQDRDDISDEQLKFM 60 Query: 61 MDTVGEQVRELSSTEGYFTPTTKVSAQTEPAANGQQAVRRITLTVDPGPRTEINATDISV 120 MDT GEQVR+L++TEGYFTP TKVS E +A G+ VRRIT+TVDPGPRT + + +ISV Sbjct: 61 MDTAGEQVRDLTATEGYFTPVTKVS---EESAAGKDGVRRITVTVDPGPRTLVESAEISV 117 Query: 121 TGVAARQDQATVARIRQDWSLPVGQPFRQEDWDKAKNTGLEQLQQKKYAAARIAASEARI 180 TG AA QD A VA++R DWSL G+PFRQ+DWDKAKN GL LQQKKYAAARIA SEARI Sbjct: 118 TGSAASQDAARVAQLRTDWSLSPGEPFRQQDWDKAKNAGLATLQQKKYAAARIADSEARI 177 Query: 181 DPQEQQAELAVRYDSGPAFTLGALQITGTRRYPDAIIRNVNPLIIGEPYDVNRLLALQRQ 240 PQ QQA+L+VRYDSGPAFTLGALQITGTRRYP++IIRNV+PLI+GEPYDV+RLLALQRQ Sbjct: 178 APQAQQADLSVRYDSGPAFTLGALQITGTRRYPESIIRNVSPLIVGEPYDVDRLLALQRQ 237 Query: 241 IQNTPYFSNAIVAIDDDPEHPDQTPVKVQVTEFPTHRIRAGVGYSTDTGAQVEGRYSNYN 300 IQNTPYFSNAIVAIDDDP HPDQTPVKVQVTEFPT RIR GVGY TDTGAQ EGRYS+YN Sbjct: 238 IQNTPYFSNAIVAIDDDPAHPDQTPVKVQVTEFPTQRIRTGVGYGTDTGAQAEGRYSHYN 297 Query: 301 MFNRAYVFDSQVRLEQKRQYGTLSLAMPPDEKAFVNSLNTSYDRTQLEGVDLRSQQVGFK 360 +FNRAYVFDSQ+RLEQKRQYG LSLAMPPD KAFVNS+NT+YDRT LEG+DLR+QQVG K Sbjct: 298 VFNRAYVFDSQLRLEQKRQYGLLSLAMPPDSKAFVNSINTAYDRTTLEGIDLRTQQVGLK 357 Query: 361 RARTGENYDTTYSLTYYRDELSQENGSALPANTVVTPGKHRALVPGFAWSRRRVDNPIFP 420 RAR +NYDTTYSLTYYRDEL QENG LPANT+VTPGKHRALVPGFAWSRR VDNPIFP Sbjct: 358 RARNSDNYDTTYSLTYYRDELVQENGVTLPANTIVTPGKHRALVPGFAWSRRNVDNPIFP 417 Query: 421 RQGNLLTLEAGFALKGLLTDQSFSRLYGRFKQFVPVGRRDIVVLRAELGGVFTKGSAGAV 480 R GNLLTLEAG ALKG+LTDQSFSRLYGRFKQFVPVG+RDIVVLRAELGGVFT G AG+V Sbjct: 418 RHGNLLTLEAGLALKGVLTDQSFSRLYGRFKQFVPVGKRDIVVLRAELGGVFTAGRAGSV 477 Query: 481 PPSLLFRTGGNDSVRGYSYQSIGNEQNGTVYPTKYLAVGSTEYQRWFTQSWGAAVFYDVG 540 P SLLFRTGGNDSVRGYSYQSIGNEQNGTVYPTKYLAVGSTEYQRWF+++WGAAVFYD+G Sbjct: 478 PASLLFRTGGNDSVRGYSYQSIGNEQNGTVYPTKYLAVGSTEYQRWFSENWGAAVFYDMG 537 Query: 541 AAADNWSNKTFYHGVGTGARWRSPVGTLNLDLAYGIQKHQIRPHVSLGIAF 591 AAADNWSNKTFYHGVGTGARWRSPVGTLNLDLAYGIQK QIRPH+SLGIAF Sbjct: 538 AAADNWSNKTFYHGVGTGARWRSPVGTLNLDLAYGIQKRQIRPHISLGIAF 588 >gi|300311501|ref|YP_003775593.1| outer membrane /protective OMA87 antigen protein [Herbaspirillum seropedicae SmR1] Length = 791 Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 106/467 (22%), Positives = 163/467 (34%), Gaps = 58/467 (12%) Query: 153 DKAKNTGLEQLQQKKYAAARIAASEARIDPQEQQAELAVRYDSGPAFTLGALQITGTRRY 212 D K G E+L YA A + A+ +D ++++ + D G + + I G + Sbjct: 315 DSTKKIG-ERLGNFGYAFANVNAN-PNVDREKKEVAFTIMIDPGKRVYVRHINIAGNTKT 372 Query: 213 PDAIIRNVNPLIIGEPYDVNRLLALQRQIQNTPYFSNAIVAIDDDPEHPDQTPVKVQVTE 272 D +IR YD ++ + ++ YF + + P DQ V ++V E Sbjct: 373 RDEVIRREFRQFEDSWYDGEKIKLSRDRVDRLGYFKEVTLDTPEVPGTSDQVDVNMKVEE 432 Query: 273 FPTHRIRAGVGYSTDTGAQVEGRYSNYNMFNRAYVFDSQVRLEQKRQYGTLSLAMPPDEK 332 PT I G G+S + G S N F + + + ++S P Sbjct: 433 KPTGNIMVGAGFSQSDKLSLTGSISQENAFGSGNTVGIDINTSSRYRTVSVSTTNPYFTD 492 Query: 333 AFVNSLNTSYDRTQLEGV----DLRSQQVG-----------FKRARTG---ENYDT---T 371 ++ Y RT V D R + +G R G EN D T Sbjct: 493 DGISRTYEVYLRTVRPSVYATGDYRVKTLGGSIKFGVPFSELDRVFFGVGLENTDVSTDT 552 Query: 372 YSLTYYRDELSQENGSALPANTVVTPGKHRAL-------VP-GFAWSRRRVDNPIFPRQG 423 S T YR + G+ + V + G + +P AW R D+ + P G Sbjct: 553 TSPTLYRQYVRDFGGAGVAGCDVTSSGNGCGIGSARTTSIPLTVAWQRDGRDSALVPTTG 612 Query: 424 NLLTLEAGFALKGLLTDQSFSRLYGRFKQFVPVGRRDIVVLRAELGGVFTKGSAGAVPPS 483 + G L + R + + F P + + + L G G P Sbjct: 613 RYQRANLEVSYLGTL---KYYRASYQHQYFQPFFSKAVTL---ALNGEVDYGRGIGSKPY 666 Query: 484 LLFRT---GGNDSVRGYSYQSIGN--EQNGTVYPTKYLAVGSTEYQ------------RW 526 +F+ GG +VRGY S+G+ +Q G G+ E Q RW Sbjct: 667 PVFKNYYAGGIGTVRGYEASSLGSLKDQYGDSMGGASRLYGNVELQFPFPGSGQDRTLRW 726 Query: 527 FTQSWGAAVFYDVGAAADNWSNKTFYHGVGTGARWRSPVGTLNLDLA 573 FT G VF D N + G G W SP+G L L Sbjct: 727 FTFFDGGNVFAD----GQNIKFNDLRYSAGVGISWVSPIGPLKLSFG 769 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,889,707 Number of extensions: 80259 Number of successful extensions: 222 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 219 Number of HSP's successfully gapped: 2 Length of query: 591 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 500 Effective length of database: 1,188,985 Effective search space: 594492500 Effective search space used: 594492500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)