BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1362.p (1078 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump pr... 2113 0.0 gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump tr... 1026 0.0 gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump pr... 998 0.0 gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr... 397 e-111 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 387 e-108 >gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1078 Score = 2113 bits (5476), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1040/1078 (96%), Positives = 1072/1078 (99%) Query: 1 MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA 60 MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA Sbjct: 1 MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA 60 Query: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLNRDIDGAARDVQAALNAARNLLP 120 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDL+RDIDGAARDVQAALNAARNLLP Sbjct: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLSRDIDGAARDVQAALNAARNLLP 120 Query: 121 TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS 180 TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS Sbjct: 121 TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS 180 Query: 181 SQPAVRIELNPTALNKYGIGSADVRTAVAATNANRPKGLLEDADRNWQIYANDQAKTAAE 240 SQPAVRIELNPTALNKYGIG+ADVRTAVAATNANRPKGLLED DRNWQIYANDQAKTAAE Sbjct: 181 SQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLLEDQDRNWQIYANDQAKTAAE 240 Query: 241 YAPLIVSYRNGTPVRVQDVAEVRDSVADVRNAGSANGKPSVLIIINRQPGANIIDTVDNV 300 YAPLIVSYRNGTPVRVQDVAEVRDSVADVRNAGS+NGKPSVLIIINRQPGANIIDTVDNV Sbjct: 241 YAPLIVSYRNGTPVRVQDVAEVRDSVADVRNAGSSNGKPSVLIIINRQPGANIIDTVDNV 300 Query: 301 RELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLMLSVALVIMVVFLFLRNARATL 360 RELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTL+LSVALVIMVVFLFLRNARATL Sbjct: 301 RELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLILSVALVIMVVFLFLRNARATL 360 Query: 361 IPAVAVPVSLIGTFGIMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRHIEAGMKP 420 IPAVAVPVSLIGTFG+MYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRHIE+GMKP Sbjct: 361 IPAVAVPVSLIGTFGVMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRHIESGMKP 420 Query: 421 YQAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSLVVSLT 480 Y+AALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSLVVSLT Sbjct: 421 YKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSLVVSLT 480 Query: 481 TTPMMCAQLLRHDPAADEARRQRRHPWLQKIADQSAAIFADMLLAYERSLAWALRAAPLM 540 TTPMMCAQLLRHDPAADEARRQRRHPWLQKIADQSAAIF DMLLAY+R+LAWALRAAPLM Sbjct: 481 TTPMMCAQLLRHDPAADEARRQRRHPWLQKIADQSAAIFEDMLLAYQRTLAWALRAAPLM 540 Query: 541 MVILVATIALNVHLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMRAKLNEFIDIVKAD 600 M+IL+ATIALNV+LYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMR KLNEFIDIV+AD Sbjct: 541 MLILLATIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMRTKLNEFIDIVRAD 600 Query: 601 PAVSDVVAFTGGQRRNGGFMYVTLKPLSERKDSADKVVGRLRIKTAKVAGARVFLVPVQD 660 PAVSDVVAFTGGQRRNGGFMYVTLKPLSERKDSADKVV RLRIKTAKVAGARVFLVPVQD Sbjct: 601 PAVSDVVAFTGGQRRNGGFMYVTLKPLSERKDSADKVVARLRIKTAKVAGARVFLVPVQD 660 Query: 661 IRIGARQSDSEYEYSLKSDDVGLLRIWEPKIRLALTNLKELEDVSSDQQDNGLQTTLTID 720 IRIGARQSDS+YEYSLKSDDVGLLRIWEPKIRLAL+NLKELED+S+DQQDNGLQTTLTID Sbjct: 661 IRIGARQSDSQYEYSLKSDDVGLLRIWEPKIRLALSNLKELEDISTDQQDNGLQTTLTID 720 Query: 721 RETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEAAPKYWQSPEILRDTYVS 780 RETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEAAP+YWQSPE LRDTYVS Sbjct: 721 RETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEAAPQYWQSPETLRDTYVS 780 Query: 781 LAGSSNLSPTTSSLSTPPALSASGQLNANTGLAQTLSTAPSKQVPLATFARFEPTTTSLA 840 LAGSSNLSPTTSSLSTPPALSASG+LNANTGLAQT+STAPS+Q+PLA F+RFEPTTTSL+ Sbjct: 781 LAGSSNLSPTTSSLSTPPALSASGKLNANTGLAQTISTAPSRQIPLAAFSRFEPTTTSLS 840 Query: 841 VNHDGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTSVLGTFAGTANAFQSSTSSQ 900 V+H+GQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPT+VLGTFAGTANAFQSSTSSQ Sbjct: 841 VSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTNVLGTFAGTANAFQSSTSSQ 900 Query: 901 PILILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLALMLTGTDFSLIALIGVIL 960 P+LILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLALM+TGTDFSLIALIGVIL Sbjct: 901 PLLILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLALMVTGTDFSLIALIGVIL 960 Query: 961 LIGIVKKNAIMMVDFAIDAERHRGLSPRDAIFEACKLRFRPIMMTTMAALLGAIPLAIGH 1020 LIGIVKKNAIMMVDFAIDAER+RG+SPRDAIFEACKLRFRPIMMTTMAALLGAIPLAIGH Sbjct: 961 LIGIVKKNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFRPIMMTTMAALLGAIPLAIGH 1020 Query: 1021 GDGAELRQPLGIAIVGGLVVSQLLTLYTTPVVYLYMERLSSWSKRRFGRKNKTETSAA 1078 GDGAELRQPLGI+IVGGLVVSQLLTLYTTPVVYLYMERLSSWSKRRFGRKNKTETSAA Sbjct: 1021 GDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLSSWSKRRFGRKNKTETSAA 1078 >gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 1026 bits (2654), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/1076 (51%), Positives = 733/1076 (68%), Gaps = 54/1076 (5%) Query: 1 MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA 60 MN S FI RP+AT+LL + I L GIVA+RLLP+S LP+VDYPTI + PGASP+ M Sbjct: 1 MNPSRQFILRPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMT 60 Query: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLNRDIDGAARDVQAALNAARNLLP 120 ++V PLER G + G+ +M+STSS ++ ITLQF+L+ +D A ++VQAA+NA NLLP Sbjct: 61 SSVTAPLERQFGQMPGLKQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGSNLLP 120 Query: 121 TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS 180 + +P P Y KVNPAD PI+ LA+TS+TM ++ D D+ +AQK+SQ+ GVG VS+ G Sbjct: 121 SDLPMPPVYSKVNPADTPIITLAVTSNTMPLPKVQDLIDTRIAQKISQLSGVGLVSLSGG 180 Query: 181 SQPAVRIELNPTALNKYGIGSADVRTAVAATNANRPKGLLEDADRNWQIYANDQAKTAAE 240 +PAVR++LNP A+ G+ DVRTA+ N N+ KG + R I ANDQ ++A E Sbjct: 181 QRPAVRMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQLRSADE 240 Query: 241 YAPLIVSYRNGTPVRVQDVAEVRDSVADVRNAGSANGKPSVLIIINRQPGANIIDTVDNV 300 Y LI++Y+NG P+RV DVA+V D +VR AN +P+V++ I RQPGAN+I VD++ Sbjct: 241 YRNLIIAYKNGAPIRVSDVADVVDGAENVRLGAWANTQPAVIVNIQRQPGANVIAVVDSI 300 Query: 301 RELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLMLSVALVIMVVFLFLRNARATL 360 +++LPQLQAS+P AID+ ++ DRT TIRAS+ + +F L+LSVALV+MV+F+FLRN AT+ Sbjct: 301 KKILPQLQASLPGAIDVHILTDRTTTIRASVDDVKFELLLSVALVVMVIFVFLRNVPATI 360 Query: 361 IPAVAVPVSLIGTFGIMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRHIEAGMKP 420 IP+VAVP+SL+GTF IMYLAGFS++NL+LMALTIATGFVVDDAIV++ENISR+IE GMKP Sbjct: 361 IPSVAVPLSLVGTFAIMYLAGFSINNLTLMALTIATGFVVDDAIVMIENISRYIEEGMKP 420 Query: 421 YQAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSLVVSLT 480 QAAL GA ++GFT++S++ SLIAV IP+L M +VGRLF EFA+TL+V+IL+S VVSLT Sbjct: 421 MQAALKGAEQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLAVSILISAVVSLT 480 Query: 481 TTPMMCAQLLRHDPAADEARRQRRHPWLQKIADQSAAIFADMLLA-YERSLAWALRAAPL 539 TPMMCA+LLRH P + + W + Q F D ++A Y L W L L Sbjct: 481 LTPMMCARLLRHQP-------EEQQGWFYHKSQQ----FFDRIIARYGVMLQWVLARQKL 529 Query: 540 MMVILVATIALNVHLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMRAKLNEFIDIVKA 599 +++ AT+ L V LY +PKGFFP QDTG + G Q+ISF AM K + +V Sbjct: 530 TLLVAAATLGLTVLLYVFVPKGFFPLQDTGVIQGISEATQSISFSAMGEKQQQLAKVVLQ 589 Query: 600 DPAVSDVVAFTG----GQRRNGGFMYVTLKPLSERKDSADKVVGRLRIK-TAKVAGARVF 654 DPAV + +F G N G M + LKP R+ SA V+ RL+ K A+V G ++ Sbjct: 590 DPAVESLTSFIGVDGTNATLNSGRMLINLKPHDVREVSATDVIRRLQGKLAAEVPGITLY 649 Query: 655 LVPVQDIRIGARQSDSEYEYSLKSDDVGLLRIWEPKIRLALTNLKELEDVSSDQQDNGLQ 714 + PVQD+ I S ++Y+++L+ D +L W PK+ L EL DV+++ QD GLQ Sbjct: 650 MQPVQDLTIEDSVSRTQYQFTLEDADPAVLSTWVPKLIARLQQQSELADVATNLQDQGLQ 709 Query: 715 TTLTIDRETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEAAPKYWQSPEIL 774 + IDR A R G+T ID+ L + FGQR ISTIY+ NQY VVME P++ P L Sbjct: 710 AYIEIDRNAASRLGITTAAIDNALYNAFGQRLISTIYTQSNQYRVVMEVKPEFQHGPAAL 769 Query: 775 RDTYVSLAGSSNLSPTTSSLSTPPALSASGQLNANTGLAQTLSTAPSKQVPLATFARFEP 834 Y+ +G +VPL++ A Sbjct: 770 DSIYLVTSGGG-------------------------------------KVPLSSIATVTE 792 Query: 835 TTTSLAVNHDGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTSVLGTFAGTANAFQ 894 T L VNH GQF A+T+SFNLA+G SL +A AI A ++G+P S + F G A AFQ Sbjct: 793 RTAPLVVNHIGQFPAATVSFNLAKGASLGEAVKAIKAAEEEIGMPASTVTNFQGAALAFQ 852 Query: 895 SSTSSQPILILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLALMLTGTDFSLIA 954 +S S+ LIL A++ +YIVLG+LYES IHPITI+STLPSAGVGALL+LM++GTD +I Sbjct: 853 ASLSNTLWLILAAIVTMYIVLGVLYESYIHPITILSTLPSAGVGALLSLMISGTDLGIIG 912 Query: 955 LIGVILLIGIVKKNAIMMVDFAIDAERHRGLSPRDAIFEACKLRFRPIMMTTMAALLGAI 1014 +IG+ILLIGIVKKNAIMM+DFA++AERH G SPR+AI++AC LRFRPI+MTTMAALLGA+ Sbjct: 913 IIGIILLIGIVKKNAIMMIDFALEAERHEGKSPREAIYQACLLRFRPILMTTMAALLGAL 972 Query: 1015 PLAIGHGDGAELRQPLGIAIVGGLVVSQLLTLYTTPVVYLYMERLSSWSKRRFGRK 1070 PL +G G G+ELRQPLGI +VGGL+VSQ+LTL+TTPV+YL + L + RFG++ Sbjct: 973 PLMLGTGVGSELRQPLGITMVGGLLVSQVLTLFTTPVIYLGFDSLGRRLRARFGQR 1028 >gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 998 bits (2581), Expect = 0.0, Method: Compositional matrix adjust. Identities = 516/1084 (47%), Positives = 736/1084 (67%), Gaps = 68/1084 (6%) Query: 1 MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA 60 M++S FI+RPI TTLL I I L G+ + LLPV+PLPQVD+PTI ++A +PG SPETMA Sbjct: 1 MSVSAAFIKRPIGTTLLAIAILLVGVAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMA 60 Query: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLNRDIDGAARDVQAALNAARNLLP 120 + VA PLER IAG+++MTS S+ ST+ITLQFDLNR+ID AA DVQAA+NA+ LP Sbjct: 61 SNVAQPLERQFSLIAGLSQMTSQSTLGSTQITLQFDLNRNIDAAALDVQAAINASTGQLP 120 Query: 121 TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS 180 +P+ PT+RK+NPAD+PI+I+++ S+ + + D AD+I+AQ++SQ+ GVG V+V G Sbjct: 121 ANLPNPPTFRKINPADSPIMIMSVQSEALPLTVVNDYADNILAQQISQISGVGLVNVNGQ 180 Query: 181 SQPAVRIELNPTALNKYGIGSADVRTAVAATNANRPKGLLEDADRNWQIYANDQAKTAAE 240 +PAVRI+++P L G+ D+R +A T N+PKG ++ A + + +Y NDQ A + Sbjct: 181 QKPAVRIQVDPAKLATLGLSLEDIRGVIATTTVNQPKGTVDGARQAFTVYTNDQLLKAEQ 240 Query: 241 YAPLIVSYRNGTPVRVQDVAEVRDS-------------VADVRNAGSANGKPSVLIIINR 287 + +++++RNG P+RV+D+ D A+ + NG+ S+++ I + Sbjct: 241 WNDMVLAWRNGAPIRVKDIGIAVDGPENNKIAAWAFAGAANTADHSITNGR-SIVLAITK 299 Query: 288 QPGANIIDTVDNVRELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLMLSVALVIM 347 QPGAN+I+TV ++ +P+L+A+IP+AI + ++DRT TIRAS+++ EFTL+L++ALV+M Sbjct: 300 QPGANVIETVGRIKAAMPRLRAAIPAAIHVNTLIDRTQTIRASVEDVEFTLVLTIALVVM 359 Query: 348 VVFLFLRNARATLIPAVAVPVSLIGTFGIMYLAGFSLDNLSLMALTIATGFVVDDAIVVL 407 V+F+FLRN ATLIP+V VP++++GT G+MY+ G+SLDNLSLMALTIA GFVVDDAIV+L Sbjct: 360 VIFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDAIVML 419 Query: 408 ENISRHIEAGMKPYQAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITL 467 ENI R++E GM P +AAL GA E+GFT++S+S+SL+AVFIP+L+M GIVGRLFREFA+T+ Sbjct: 420 ENIYRYVEEGMTPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTV 479 Query: 468 SVAILVSLVVSLTTTPMMCAQLLRHDPAADEARRQRRHPWLQKIADQSAAIFADMLLAYE 527 ++ I VS+++SLT TPM+C++ L+++ R + + W ++ D ML Y+ Sbjct: 480 TLTIAVSVIISLTLTPMLCSRFLKNEHGQ---RHGKLYQWFERCFDA-------MLAGYK 529 Query: 528 RSLAWALRAAPLMMVILVATIALNVHLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMR 587 R L ++ + ++ +AT+AL L+ IPKGFFPQQD G +VG Q S AM Sbjct: 530 RGLDVVMKHQFITLMSFIATLALTAVLFIFIPKGFFPQQDNGVIVGFAESAQDTSSAAMH 589 Query: 588 AKLNEFIDIVKADPAVSDVVAFT---GGQRRNGGFMYVTLKPLSE-RKDSADKVVGRLRI 643 +L + ++V+ DP DV+ F G N G ++ LKP + R +AD+++ RLR Sbjct: 590 ERLLKVAEVVRQDP---DVIGFAMSAGSTTFNTGQFFIALKPKDQGRTTNADEIIARLRP 646 Query: 644 KTAKVAGARVFLVPVQDIRIGARQSDSEYEYSLKSDDVGLLRIWEPKIRLALTNLKELED 703 K A++ G +F+ QDI +G R S ++Y+Y++ D+ L +W P++ L +L D Sbjct: 647 KVARIEGVNLFMQASQDINVGGRLSRTQYQYTITDTDLDELNVWAPRMLERFRQLPQLTD 706 Query: 704 VSSDQQDNGLQTTLTIDRETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEA 763 V+SDQQ+ +TIDR A G++P LID+T+ D GQRQ++ ++ +N Y V++E Sbjct: 707 VASDQQNQAAAAVITIDRARASSFGISPSLIDATIYDAIGQRQVAQYFTQINSYRVILEV 766 Query: 764 APKYWQSPEILRDTYVSLAGSSNLSPTTSSLSTPPALSASGQLNANTGLAQTLSTAPSKQ 823 P + P + Y++ SP T +Q Sbjct: 767 TPALQKDPALFDKLYLT-------SPLTG-----------------------------QQ 790 Query: 824 VPLATFARFEPTTTS-LAVNHDGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTSV 882 VPL+TF + + + TS L+++H QF A T+SFNLA+GVSL +A I + Q+GVP ++ Sbjct: 791 VPLSTFVKIDTSKTSYLSISHQSQFPAVTISFNLAKGVSLGEAVDVIQKTKDQMGVPQTL 850 Query: 883 LGTFAGTANAFQSSTSSQPILILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLA 942 +G F GTA AF S SSQP LI AL+AVYIVLG+LYES IHP+TI+STLPSAGVGALL Sbjct: 851 VGNFQGTAKAFGDSLSSQPYLIAAALIAVYIVLGLLYESYIHPLTILSTLPSAGVGALLI 910 Query: 943 LMLTGTDFSLIALIGVILLIGIVKKNAIMMVDFAIDAERHRGLSPRDAIFEACKLRFRPI 1002 LM G D S+IALIG+ILLIGIVKKN IMM+DFA+ AER +G+ P AI++AC LRFRPI Sbjct: 911 LMAGGYDLSVIALIGIILLIGIVKKNGIMMIDFALTAERSQGMKPEQAIYQACLLRFRPI 970 Query: 1003 MMTTMAALLGAIPLAIGHGDGAELRQPLGIAIVGGLVVSQLLTLYTTPVVYLYMERLSSW 1062 MMTTM ALL +PL +GHG G+ELR+PLG A+VGGL++SQ LTL+TTPVVYLY++R W Sbjct: 971 MMTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLILSQALTLFTTPVVYLYLDRAHYW 1030 Query: 1063 SKRR 1066 R+ Sbjct: 1031 YMRK 1034 >gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1049 Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust. Identities = 327/1092 (29%), Positives = 547/1092 (50%), Gaps = 90/1092 (8%) Query: 7 FIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMAATVATP 66 FI RPI +L I + LAGIV+ LP++ P + P I+I+A+ PGAS +T+ TV Sbjct: 5 FIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDTVTQI 64 Query: 67 LERAMGAIAGVTEMTSTS-SQNSTRITLQFDLNRDIDGAARDVQAALNAARNLLPTGMPS 125 +E+ M + ++ M STS S S ITL F+ + D A VQ L+ A LLP+ + Sbjct: 65 IEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPSEVQQ 124 Query: 126 NPTYRKVNPADAPILILAMTSD--TMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGSSQP 183 A + +LA TS+ +M+ + D + V +S+V GVG ++ GS Q Sbjct: 125 QGI-TVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS-QY 182 Query: 184 AVRIELNPTALNKYGIGSADVRTAVAATNANRPKGLL------EDADRNWQIYANDQAKT 237 A+RI L+P LN YG+ DV+ A+ A NA G L E+ N I A + +T Sbjct: 183 AMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRLRT 242 Query: 238 AAEYAPLIV-SYRNGTPVRVQDVAEVRDSVADVRNAGSANGKPSVLIIINRQPGANIIDT 296 A ++ +++ + G V+++DVA + + G NGKP+ + I GAN +DT Sbjct: 243 ADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANALDT 302 Query: 297 VDNVRELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLMLSVALVIMVVFLFLRNA 356 V + + + +L+ P+ + ++ D TP +R S++E TL+ +V LV +V++LFL+N Sbjct: 303 VKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFLQNF 362 Query: 357 RATLIPAVAVPVSLIGTFGIMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRHI-E 415 RATLIP +AVPV L+GTFG++ + GF+++ L++ A+ +A G +VDDAIVV+EN+ R + E Sbjct: 363 RATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVMSE 422 Query: 416 AGMKPYQAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSL 475 G+ P QA ++ ++ +++ L AVF+P+ G G ++R+F+IT+ A+ +S+ Sbjct: 423 EGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTLSV 482 Query: 476 VVSLTTTPMMCAQLLRHDPAADEARRQRRHPWLQKIADQSAAIFADMLLAYERSLAWALR 535 +V+L TP +CA LL+ W + D+S + ++ + W Sbjct: 483 LVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDRSNIRYQG-IVRHMLGRGWRYM 541 Query: 536 AAPLMMVILVATIALNVHLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMRAKLNEFID 595 AA +++ LV V + +P GF P +D G L ++ + A +A+ +E I Sbjct: 542 AAYAVLLALV------VAGFMKLPVGFLPDEDQGTLFAIMQ----LPSGATKARTDEVIR 591 Query: 596 ------IVKADPAVSDVVAFTG----GQRRNGGFMYVTLKPLSERKD---SADKVVGRLR 642 +V AVS V A +G G +N GF ++ LKP ERK S V + Sbjct: 592 QVEQHFLVDQKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAG 651 Query: 643 IKTAKVAGARVF-LVPVQDIRIGARQSDSEYEYSLKSD-DVGLLRIWEPKIRL--ALTNL 698 A + ARVF P +G + + ++ LK + ++G + + + +L L Sbjct: 652 AAFANIRDARVFAFAPPAVSELG---NATGFDLMLKDEANLGHAALMQARNQLLGELMQD 708 Query: 699 KELEDVSSDQQDNGLQTTLTIDRETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYH 758 K L V + ++ + L++D + A GV I+ T++ +G ++ Sbjct: 709 KRLVAVRPNGLEDTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKK 768 Query: 759 VVMEAAPKYWQSPEILRDTYVSLAGSSNLSPTTSSLSTPPALSASGQLNANTGLAQTLST 818 V+++ +Y P + YV S+ S+ ST S S +L G+ Sbjct: 769 VMLQGDAQYRMLPSDVDRWYVR--NSAGTMVPFSAFSTASWTSGSPRLERYNGV------ 820 Query: 819 APSKQVPLATFARFEPTTTSLAVNHDGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGV 878 PS ++ L L S +A A ++ A+A++ Sbjct: 821 -PSMEI---------------------------LGMALPGAASSGEAMAIVEAALAKM-- 850 Query: 879 PTSVLGTFAGTANAFQSSTSSQPILILTALLAVYIVLGILYESLIHPITIISTLPSAGVG 938 P + + G + ++S+ IL ++L V++ L LYES P ++I +P G Sbjct: 851 PPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPFSVILVVPLGVFG 910 Query: 939 ALLALMLTGTDFSLIALIGVILLIGIVKKNAIMMVDFAIDAERHRGLSPRDAIFEACKLR 998 ALL MLT + +G++ IG+ KNAI++V+FA D H G S +A EA ++R Sbjct: 911 ALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEH-GKSLVEATMEAVRMR 969 Query: 999 FRPIMMTTMAALLGAIPLAIGHGDGAELRQPLGIAIVGGLVVSQLLTLYTTPVVYLYMER 1058 RPI+MT++A +LG +P+ +G G GA + LG A++GG++ +L ++ P+ ++ + Sbjct: 970 LRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVFFVPLFFVIIMT 1029 Query: 1059 LSSWSKRRFGRK 1070 L FGRK Sbjct: 1030 L-------FGRK 1034 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 387 bits (993), Expect = e-108, Method: Compositional matrix adjust. Identities = 327/1110 (29%), Positives = 554/1110 (49%), Gaps = 107/1110 (9%) Query: 7 FIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMAATVATP 66 FI RPI ++ I I L G+++ R L + P + P ++I A+ GAS +T+ +V Sbjct: 5 FIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDSVTQV 64 Query: 67 LERAMGAIAGVTEMTSTSSQNSTR-ITLQFDLNRDIDGAARDVQAALNAARNLLPTGMPS 125 +E+ M + + M+++SS + ++L F + D A VQ L LP + + Sbjct: 65 IEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQAVQN 124 Query: 126 NPTYRKVNPADAPIL-ILAMTSDT--MTQGQMYDAADSIVAQKLSQVRGVGQVSVGGSSQ 182 N V A IL +L++TSD +T + D S + ++S+V GVG V+ G++ Sbjct: 125 NGV--TVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGTNY 182 Query: 183 PAVRIELNPTALNKYGIGSADVRTAVAATNANRPKGLL------EDADRNWQIYANDQAK 236 A+RI ++P L KY + +D+ +A+ A N G + N I A + Sbjct: 183 -AMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKLT 241 Query: 237 TAAEYAPLIV-SYRNGTPVRVQDVAEVRDSVADVRNAGSANGKPSVLIIINRQPGANIID 295 T E+ +IV S +G+ V++ DVA V + A NGKPS + I GAN + Sbjct: 242 TPDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANALA 301 Query: 296 TVDNVRELLPQLQASIPSAIDMK--VVLDRTPTIRASLKETEFTLMLSVALVIMVVFLFL 353 T D V++ L +L+ P+++ +K + D TP +R SL+E TL+ ++ LV+++++LFL Sbjct: 302 TADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLFL 361 Query: 354 RNARATLIPAVAVPVSLIGTFGIMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRH 413 +N RAT IPA+ VPV L+GTFGI+ + G+S++ L++ + +A G +VDDAIVV+EN+ R Sbjct: 362 QNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERL 421 Query: 414 I-EAGMKPYQAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAIL 472 + E + P +A +E+ ++ +++ L AVFIP+ G G ++R+F+IT+ A+ Sbjct: 422 MSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMA 481 Query: 473 VSLVVSLTTTPMMCAQLLRHDPAADEARRQRRHPWLQKIADQSAAIFADMLLAYERSLAW 532 +S++V+LT TP +CA LL+ A ++ R W + D+SA Y+ +A Sbjct: 482 LSVMVALTLTPALCATLLKPH-AGGHVQQGRFFTWFNRSFDRSAT-------RYQGGVAG 533 Query: 533 ALRAAP--LMMVILVATIALNVHLYKAIPKGFFPQQDTGRLVGGIR---GDQAISFQAMR 587 L+ L+M L+A +A+ V L+ +P F P++D G L+ I+ G A + Sbjct: 534 LLKRGKRGLLMYALIA-VAMAV-LFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVV 591 Query: 588 AKLNEFIDIVKADPAVSDVVAF----TGGQRRNGGFMYVTLKPLSERK---DSADKVVGR 640 + E+ + +V V+A GG +NG ++ LK +R SA ++V R Sbjct: 592 KTVQEY--FMNKPESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRR 649 Query: 641 LRIKTAKVAGARVFLVPVQDIRIGARQSDSEYEYSLKSDDVG------LLRIWEPKIRLA 694 +K+ GARVFL+ +R G QS + L+ DVG LL+ + ++LA Sbjct: 650 ANADLSKIRGARVFLMNPPAVR-GLGQSSG---FDLELKDVGGVGHDALLQARDQFLQLA 705 Query: 695 LTNLKELEDVSSDQQDNGLQTTLTIDRETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGM 754 +N L +V + D+ Q + ID A + I++TL+ G ++ S Sbjct: 706 RSN-ALLANVRTTGLDDTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNG 764 Query: 755 NQYHVVMEAAPKYWQSPEILRDTYVSLAGSSNLSPTTSSLSTPPALSASGQLNANTGLAQ 814 V ++ + + L YV Sbjct: 765 RVKKVYVQGDSAFRMQADDLNRWYV----------------------------------- 789 Query: 815 TLSTAPSKQVPLATFARFEPTTT-SLAVNHDGQFVASTLSFNL----AEGVSLSQATAAI 869 A S+ VP A F + T SL ++G SF + A GVS A A + Sbjct: 790 --RNAASQMVPFAAFMSSQWTYGPSLLERYNG-----VSSFEIVGEPAAGVSSGTAMAEV 842 Query: 870 DRAMAQLGVPTSVLGTFAGTANAFQSSTSSQPILILTALLAVYIVLGILYESLIHPITII 929 ++ +AQL P + + G++ + S + P+L ++L V++ L LYES P +I Sbjct: 843 EKLVAQL--PAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVI 900 Query: 930 STLPSAGVGALLALMLTGTDFSLIALIGVILLIGIVKKNAIMMVDFAIDAERHR-GLSPR 988 +P +G +L + G + +G++ +G+ KNAI++V+FA + H G S Sbjct: 901 LAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFA--KQLHESGKSLW 958 Query: 989 DAIFEACKLRFRPIMMTTMAALLGAIPLAIGHGDGAELRQPLGIAIVGGLVVSQLLTLYT 1048 +A EA +LR RPI+MT++A + G +PLA+ G G+ R+ +G ++GG++ + LL ++ Sbjct: 959 EATLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFF 1018 Query: 1049 TPVVYLYMERLSSWSKRRFGRKNKTETSAA 1078 P+ Y Y+ + +W RR RK + + A Sbjct: 1019 VPLFY-YL--IGAWLDRRAARKPRQDDDHA 1045 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,901,376 Number of extensions: 114599 Number of successful extensions: 594 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 533 Number of HSP's successfully gapped: 22 Length of query: 1078 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 983 Effective length of database: 1,170,045 Effective search space: 1150154235 Effective search space used: 1150154235 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)