BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1361.p (1035 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump tr... 1943 0.0 gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump pr... 1071 0.0 gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump pr... 1051 0.0 gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr... 414 e-116 gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 412 e-116 >gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 1943 bits (5034), Expect = 0.0, Method: Compositional matrix adjust. Identities = 984/1048 (93%), Positives = 1014/1048 (96%), Gaps = 13/1048 (1%) Query: 1 MNPSRQFILRPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMT 60 MNPSRQFILRPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMT Sbjct: 1 MNPSRQFILRPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMT 60 Query: 61 SSVTAPLERQFGQMPGLKQMASTSSGGASVITLQFNLDLSLDVAEQEVQAAINAGSNLLP 120 SSVTAPLERQFGQMPGLKQM+STSSGGASVITLQFNLDLSLD+AEQEVQAAINAGSNLLP Sbjct: 61 SSVTAPLERQFGQMPGLKQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGSNLLP 120 Query: 121 SDLPMPPVYSKVNPADTPIITLAVTSKTMPLPKVQDLIDTRLAQKISQLSGVGLVSLSGG 180 SDLPMPPVYSKVNPADTPIITLAVTS TMPLPKVQDLIDTR+AQKISQLSGVGLVSLSGG Sbjct: 121 SDLPMPPVYSKVNPADTPIITLAVTSNTMPLPKVQDLIDTRIAQKISQLSGVGLVSLSGG 180 Query: 181 QRPAVRMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQLRSADE 240 QRPAVRMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQLRSADE Sbjct: 181 QRPAVRMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQLRSADE 240 Query: 241 YRKLIIAYKNGAPIRVSDVADVIDGAENVRLGAWANQQPAVIVNIQRQPGANVIAVVDSI 300 YR LIIAYKNGAPIRVSDVADV+DGAENVRLGAWAN QPAVIVNIQRQPGANVIAVVDSI Sbjct: 241 YRNLIIAYKNGAPIRVSDVADVVDGAENVRLGAWANTQPAVIVNIQRQPGANVIAVVDSI 300 Query: 301 KKILPQLQANLPGSIDVHILTDRTTTIRASVADVKFELLLSVALVVMVIFVFLRNVPATI 360 KKILPQLQA+LPG+IDVHILTDRTTTIRASV DVKFELLLSVALVVMVIFVFLRNVPATI Sbjct: 301 KKILPQLQASLPGAIDVHILTDRTTTIRASVDDVKFELLLSVALVVMVIFVFLRNVPATI 360 Query: 361 IPSVAVPLSLVGTFAVMYLAGFSINNLTLMALTIATGFVVDDAIVMIENISRYIEEGMKP 420 IPSVAVPLSLVGTFA+MYLAGFSINNLTLMALTIATGFVVDDAIVMIENISRYIEEGMKP Sbjct: 361 IPSVAVPLSLVGTFAIMYLAGFSINNLTLMALTIATGFVVDDAIVMIENISRYIEEGMKP 420 Query: 421 MQAALKGAEQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLAVSILISAVVSLT 480 MQAALKGAEQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLAVSILISAVVSLT Sbjct: 421 MQAALKGAEQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLAVSILISAVVSLT 480 Query: 481 LTPMMCARLLRHQPEEQQGWFYHQSQAFFDRIIARYGVMLQWVLQRQKMTLLVAVATLGL 540 LTPMMCARLLRHQPEEQQGWFYH+SQ FFDRIIARYGVMLQWVL RQK+TLLVA ATLGL Sbjct: 481 LTPMMCARLLRHQPEEQQGWFYHKSQQFFDRIIARYGVMLQWVLARQKLTLLVAAATLGL 540 Query: 541 TALLYVFVPKGFFPLQDTGVIQGISEASQSISFGAMGAKQQELAKVVLEDPAVDSLSSFI 600 T LLYVFVPKGFFPLQDTGVIQGISEA+QSISF AMG KQQ+LAKVVL+DPAV+SL+SFI Sbjct: 541 TVLLYVFVPKGFFPLQDTGVIQGISEATQSISFSAMGEKQQQLAKVVLQDPAVESLTSFI 600 Query: 601 GVDGTNATLNSGRMLINLKPHEERDVSASDVIRRLQPKLAQQVPGVTLYMQPVQDLTIED 660 GVDGTNATLNSGRMLINLKPH+ R+VSA+DVIRRLQ KLA +VPG+TLYMQPVQDLTIED Sbjct: 601 GVDGTNATLNSGRMLINLKPHDVREVSATDVIRRLQGKLAAEVPGITLYMQPVQDLTIED 660 Query: 661 SVSRTQYQFTLEDADAGTLSSWVPKLIARLQQVPQLADVASNLQDQGLQAYIEIDRNAAS 720 SVSRTQYQFTLEDAD LS+WVPKLIARLQQ +LADVA+NLQDQGLQAYIEIDRNAAS Sbjct: 661 SVSRTQYQFTLEDADPAVLSTWVPKLIARLQQQSELADVATNLQDQGLQAYIEIDRNAAS 720 Query: 721 RLGITTAAIDNALYNAFGQRLISTIYTQSNLYRVVMEVKPEFQHGPQALDSIFLVTSAGG 780 RLGITTAAIDNALYNAFGQRLISTIYTQSN YRVVMEVKPEFQHGP ALDSI+LVTS GG Sbjct: 721 RLGITTAAIDNALYNAFGQRLISTIYTQSNQYRVVMEVKPEFQHGPAALDSIYLVTSGGG 780 Query: 781 KVPLSSIATVTERTAPLVVNHIGQFPAATISFNLAKGASLGEAVKAIKAAEEEIGMPSST 840 KVPLSSIATVTERTAPLVVNHIGQFPAAT+SFNLAKGASLGEAVKAIKAAEEEIGMP+ST Sbjct: 781 KVPLSSIATVTERTAPLVVNHIGQFPAATVSFNLAKGASLGEAVKAIKAAEEEIGMPAST 840 Query: 841 VTNFQGAALAFQASLSNTLWLILAAIVTMYIVLGVLYESYIHPITILSTLPSAGVGALLS 900 VTNFQGAALAFQASLSNTLWLILAAIVTMYIVLGVLYESYIHPITILSTLPSAGVGALLS Sbjct: 841 VTNFQGAALAFQASLSNTLWLILAAIVTMYIVLGVLYESYIHPITILSTLPSAGVGALLS 900 Query: 901 LMISGTDLGIIGIIGIILLIGIVKKNAIMMIDFALEAERHQGKSPQEAIYQACLLRFRPI 960 LMISGTDLGIIGIIGIILLIGIVKKNAIMMIDFALEAERH+GKSP+EAIYQACLLRFRPI Sbjct: 901 LMISGTDLGIIGIIGIILLIGIVKKNAIMMIDFALEAERHEGKSPREAIYQACLLRFRPI 960 Query: 961 LMTTMAALLGALPLMLGTGVGSELRQPLGITMVGGLLVSQVLTLFTTPVIYLGFDSLGRR 1020 LMTTMAALLGALPLMLGTGVGSELRQPLGITMVGGLLVSQVLTLFTTPVIYLGFDSLGRR Sbjct: 961 LMTTMAALLGALPLMLGTGVGSELRQPLGITMVGGLLVSQVLTLFTTPVIYLGFDSLGRR 1020 Query: 1021 LRARFGRK-------------ASLPPAV 1035 LRARFG++ A+LPPAV Sbjct: 1021 LRARFGQRAPGPGGGDDEGKPAALPPAV 1048 >gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 1071 bits (2769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 559/1049 (53%), Positives = 756/1049 (72%), Gaps = 24/1049 (2%) Query: 1 MNPSRQFILRPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMT 60 M+ S FI RP+ T+LL +AILLVG+ + LLP++ LP+VD+PTIQV PG SP+ M Sbjct: 1 MSVSAAFIKRPIGTTLLAIAILLVGVAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMA 60 Query: 61 SSVTAPLERQFGQMPGLKQMASTSSGGASVITLQFNLDLSLDVAEQEVQAAINAGSNLLP 120 S+V PLERQF + GL QM S S+ G++ ITLQF+L+ ++D A +VQAAINA + LP Sbjct: 61 SNVAQPLERQFSLIAGLSQMTSQSTLGSTQITLQFDLNRNIDAAALDVQAAINASTGQLP 120 Query: 121 SDLPMPPVYSKVNPADTPIITLAVTSKTMPLPKVQDLIDTRLAQKISQLSGVGLVSLSGG 180 ++LP PP + K+NPAD+PI+ ++V S+ +PL V D D LAQ+ISQ+SGVGLV+++G Sbjct: 121 ANLPNPPTFRKINPADSPIMIMSVQSEALPLTVVNDYADNILAQQISQISGVGLVNVNGQ 180 Query: 181 QRPAVRMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQLRSADE 240 Q+PAVR+Q++P +A LGL+L+D+R I VNQ KG+ DG +A T+ NDQL A++ Sbjct: 181 QKPAVRIQVDPAKLATLGLSLEDIRGVIATTTVNQPKGTVDGARQAFTVYTNDQLLKAEQ 240 Query: 241 YRKLIIAYKNGAPIRVSDVADVIDGAENVRLGAWA------------NQQPAVIVNIQRQ 288 + +++A++NGAPIRV D+ +DG EN ++ AWA ++++ I +Q Sbjct: 241 WNDMVLAWRNGAPIRVKDIGIAVDGPENNKIAAWAFAGAANTADHSITNGRSIVLAITKQ 300 Query: 289 PGANVIAVVDSIKKILPQLQANLPGSIDVHILTDRTTTIRASVADVKFELLLSVALVVMV 348 PGANVI V IK +P+L+A +P +I V+ L DRT TIRASV DV+F L+L++ALVVMV Sbjct: 301 PGANVIETVGRIKAAMPRLRAAIPAAIHVNTLIDRTQTIRASVEDVEFTLVLTIALVVMV 360 Query: 349 IFVFLRNVPATIIPSVAVPLSLVGTFAVMYLAGFSINNLTLMALTIATGFVVDDAIVMIE 408 IFVFLRNV AT+IPSV VPL+++GT VMY+ G+S++NL+LMALTIA GFVVDDAIVM+E Sbjct: 361 IFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDAIVMLE 420 Query: 409 NISRYIEEGMKPMQAALKGAEQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLA 468 NI RY+EEGM P++AALKGA +IGFTIIS++ SL+AV IPLL MG +VGRLF EFAVT+ Sbjct: 421 NIYRYVEEGMTPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVT 480 Query: 469 VSILISAVVSLTLTPMMCARLLRHQPEEQQGWFYHQSQAFFDRIIARYGVMLQWVLQRQK 528 ++I +S ++SLTLTPM+C+R L+++ ++ G Y + FD ++A Y L V++ Q Sbjct: 481 LTIAVSVIISLTLTPMLCSRFLKNEHGQRHGKLYQWFERCFDAMLAGYKRGLDVVMKHQF 540 Query: 529 MTLLVAVATLGLTALLYVFVPKGFFPLQDTGVIQGISEASQSISFGAMGAKQQELAKVVL 588 +TL+ +ATL LTA+L++F+PKGFFP QD GVI G +E++Q S AM + ++A+VV Sbjct: 541 ITLMSFIATLALTAVLFIFIPKGFFPQQDNGVIVGFAESAQDTSSAAMHERLLKVAEVVR 600 Query: 589 EDPAVDSLSSFIGVDGTNATLNSGRMLINLKPHEE-RDVSASDVIRRLQPKLAQQVPGVT 647 +DP V + G + T N+G+ I LKP ++ R +A ++I RL+PK+A ++ GV Sbjct: 601 QDPDVIGFAMSAG----STTFNTGQFFIALKPKDQGRTTNADEIIARLRPKVA-RIEGVN 655 Query: 648 LYMQPVQDLTIEDSVSRTQYQFTLEDADAGTLSSWVPKLIARLQQVPQLADVASNLQDQG 707 L+MQ QD+ + +SRTQYQ+T+ D D L+ W P+++ R +Q+PQL DVAS+ Q+Q Sbjct: 656 LFMQASQDINVGGRLSRTQYQYTITDTDLDELNVWAPRMLERFRQLPQLTDVASDQQNQA 715 Query: 708 LQAYIEIDRNAASRLGITTAAIDNALYNAFGQRLISTIYTQSNLYRVVMEVKPEFQHGPQ 767 A I IDR AS GI+ + ID +Y+A GQR ++ +TQ N YRV++EV P Q P Sbjct: 716 AAAVITIDRARASSFGISPSLIDATIYDAIGQRQVAQYFTQINSYRVILEVTPALQKDPA 775 Query: 768 ALDSIFLVTS-AGGKVPLSSIATV-TERTAPLVVNHIGQFPAATISFNLAKGASLGEAVK 825 D ++L + G +VPLS+ + T +T+ L ++H QFPA TISFNLAKG SLGEAV Sbjct: 776 LFDKLYLTSPLTGQQVPLSTFVKIDTSKTSYLSISHQSQFPAVTISFNLAKGVSLGEAVD 835 Query: 826 AIKAAEEEIGMPSSTVTNFQGAALAFQASLSNTLWLILAAIVTMYIVLGVLYESYIHPIT 885 I+ ++++G+P + V NFQG A AF SLS+ +LI AA++ +YIVLG+LYESYIHP+T Sbjct: 836 VIQKTKDQMGVPQTLVGNFQGTAKAFGDSLSSQPYLIAAALIAVYIVLGLLYESYIHPLT 895 Query: 886 ILSTLPSAGVGALLSLMISGTDLGIIGIIGIILLIGIVKKNAIMMIDFALEAERHQGKSP 945 ILSTLPSAGVGALL LM G DL +I +IGIILLIGIVKKN IMMIDFAL AER QG P Sbjct: 896 ILSTLPSAGVGALLILMAGGYDLSVIALIGIILLIGIVKKNGIMMIDFALTAERSQGMKP 955 Query: 946 QEAIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLGITMVGGLLVSQVLTLF 1005 ++AIYQACLLRFRPI+MTTM ALL LPLMLG G GSELR+PLG MVGGL++SQ LTLF Sbjct: 956 EQAIYQACLLRFRPIMMTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLILSQALTLF 1015 Query: 1006 TTPVIYLGFDSLG----RRLRARFGRKAS 1030 TTPV+YL D R+ AR RKA+ Sbjct: 1016 TTPVVYLYLDRAHYWYMRKKEARQARKAA 1044 >gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1078 Score = 1051 bits (2718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/1075 (50%), Positives = 736/1075 (68%), Gaps = 52/1075 (4%) Query: 1 MNPSRQFILRPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMT 60 MN S FI RP+AT+LL + I L GIVA+RLLP+S LP+VDYPTI + PGASP+ M Sbjct: 1 MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA 60 Query: 61 SSVTAPLERQFGQMPGLKQMASTSSGGASVITLQFNLDLSLDVAEQEVQAAINAGSNLLP 120 ++V PLER G + G+ +M STSS ++ ITLQF+L +D A ++VQAA+NA NLLP Sbjct: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLSRDIDGAARDVQAALNAARNLLP 120 Query: 121 SDLPMPPVYSKVNPADTPIITLAVTSKTMPLPKVQDLIDTRLAQKISQLSGVGLVSLSGG 180 + +P P Y KVNPAD PI+ LA+TS TM ++ D D+ +AQK+SQ+ GVG VS+ G Sbjct: 121 TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS 180 Query: 181 QRPAVRMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQLRSADE 240 +PAVR++LNP A+ G+ DVRTA+ N N+ KG + R I ANDQ ++A E Sbjct: 181 SQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLLEDQDRNWQIYANDQAKTAAE 240 Query: 241 YRKLIIAYKNGAPIRVSDVADVIDGAENVRLGAWANQQPAVIVNIQRQPGANVIAVVDSI 300 Y LI++Y+NG P+RV DVA+V D +VR +N +P+V++ I RQPGAN+I VD++ Sbjct: 241 YAPLIVSYRNGTPVRVQDVAEVRDSVADVRNAGSSNGKPSVLIIINRQPGANIIDTVDNV 300 Query: 301 KKILPQLQANLPGSIDVHILTDRTTTIRASVADVKFELLLSVALVVMVIFVFLRNVPATI 360 +++LPQLQA++P +ID+ ++ DRT TIRAS+ + +F L+LSVALV+MV+F+FLRN AT+ Sbjct: 301 RELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLILSVALVIMVVFLFLRNARATL 360 Query: 361 IPSVAVPLSLVGTFAVMYLAGFSINNLTLMALTIATGFVVDDAIVMIENISRYIEEGMKP 420 IP+VAVP+SL+GTF VMYLAGFS++NL+LMALTIATGFVVDDAIV++ENISR+IE GMKP Sbjct: 361 IPAVAVPVSLIGTFGVMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRHIESGMKP 420 Query: 421 MQAALKGAEQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLAVSILISAVVSLT 480 +AAL GA ++GFT++S++ SLIAV IP+L M +VGRLF EFA+TL+V+IL+S VVSLT Sbjct: 421 YKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSLVVSLT 480 Query: 481 LTPMMCARLLRHQP-------EEQQGWFYH---QSQAFFDRIIARYGVMLQWVLQRQKMT 530 TPMMCA+LLRH P + + W QS A F+ ++ Y L W L+ + Sbjct: 481 TTPMMCAQLLRHDPAADEARRQRRHPWLQKIADQSAAIFEDMLLAYQRTLAWALRAAPLM 540 Query: 531 LLVAVATLGLTALLYVFVPKGFFPLQDTGVIQGISEASQSISFGAMGAKQQELAKVVLED 590 +L+ +AT+ L LY +PKGFFP QDTG + G Q+ISF AM K E +V D Sbjct: 541 MLILLATIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMRTKLNEFIDIVRAD 600 Query: 591 PAVDSLSSFIGVDGTNATLNSGRMLINLKPHEERDVSASDVIRRLQPKLAQQVPGVTLYM 650 PAV + +F G N G M + LKP ER SA V+ RL+ K A +V G +++ Sbjct: 601 PAVSDVVAFTG----GQRRNGGFMYVTLKPLSERKDSADKVVARLRIKTA-KVAGARVFL 655 Query: 651 QPVQDLTIEDSVSRTQYQFTLEDADAGTLSSWVPKLIARLQQVPQLADVASNLQDQGLQA 710 PVQD+ I S +QY+++L+ D G L W PK+ L + +L D++++ QD GLQ Sbjct: 656 VPVQDIRIGARQSDSQYEYSLKSDDVGLLRIWEPKIRLALSNLKELEDISTDQQDNGLQT 715 Query: 711 YIEIDRNAASRLGITTAAIDNALYNAFGQRLISTIYTQSNLYRVVMEVKPEFQHGPQALD 770 + IDR A R G+T ID+ L + FGQR ISTIY+ N Y VVME P++ P+ L Sbjct: 716 TLTIDRETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEAAPQYWQSPETLR 775 Query: 771 SIFL-------------------VTSAGGK------------------VPLSSIATVTER 793 ++ SA GK +PL++ + Sbjct: 776 DTYVSLAGSSNLSPTTSSLSTPPALSASGKLNANTGLAQTISTAPSRQIPLAAFSRFEPT 835 Query: 794 TAPLVVNHIGQFPAATISFNLAKGASLGEAVKAIKAAEEEIGMPSSTVTNFQGAALAFQA 853 T L V+H GQF A+T+SFNLA+G SL +A AI A ++G+P++ + F G A AFQ+ Sbjct: 836 TTSLSVSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTNVLGTFAGTANAFQS 895 Query: 854 SLSNTLWLILAAIVTMYIVLGVLYESYIHPITILSTLPSAGVGALLSLMISGTDLGIIGI 913 S S+ LIL A++ +YIVLG+LYES IHPITI+STLPSAGVGALL+LM++GTD +I + Sbjct: 896 STSSQPLLILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLALMVTGTDFSLIAL 955 Query: 914 IGIILLIGIVKKNAIMMIDFALEAERHQGKSPQEAIYQACLLRFRPILMTTMAALLGALP 973 IG+ILLIGIVKKNAIMM+DFA++AER++G SP++AI++AC LRFRPI+MTTMAALLGA+P Sbjct: 956 IGVILLIGIVKKNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFRPIMMTTMAALLGAIP 1015 Query: 974 LMLGTGVGSELRQPLGITMVGGLLVSQVLTLFTTPVIYLGFDSLGRRLRARFGRK 1028 L +G G G+ELRQPLGI++VGGL+VSQ+LTL+TTPV+YL + L + RFGRK Sbjct: 1016 LAIGHGDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLSSWSKRRFGRK 1070 >gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1049 Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust. Identities = 319/1061 (30%), Positives = 544/1061 (51%), Gaps = 54/1061 (5%) Query: 4 SRQFILRPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMTSSV 63 +R FI RP+ +L + ++L GIV+ LP++ P + P I + YPGAS + +V Sbjct: 2 ARFFIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDTV 61 Query: 64 TAPLERQFGQMPGLKQMASTS-SGGASVITLQFNLDLSLDVAEQEVQAAINAGSNLLPSD 122 T +E++ + L MASTS S G+ ITL F + D A+ +VQ ++ + LLPS+ Sbjct: 62 TQIIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPSE 121 Query: 123 LPMPPVYSKVNPADTPIITLAVTSK--TMPLPKVQDLIDTRLAQKISQLSGVGLVSLSGG 180 + + + A + LA TS+ +M + D + + IS++ GVG +L G Sbjct: 122 VQQQGI-TVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS 180 Query: 181 QRPAVRMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRA------STIDANDQ 234 Q A+R+ L+P + + GL DV+ AI N + G G A +TI A + Sbjct: 181 QY-AMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTR 239 Query: 235 LRSADEYRKLII-AYKNGAPIRVSDVADVIDGAENVRLGAWANQQPAVIVNIQRQPGANV 293 LR+AD+++ +++ GA +++ DVA + G+E+ N +PA + I+ GAN Sbjct: 240 LRTADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANA 299 Query: 294 IAVVDSIKKILPQLQANLPGSIDVHILTDRTTTIRASVADVKFELLLSVALVVMVIFVFL 353 + V +I K + +L+ P + V D T +R S+ +V L+ +V LV +V+++FL Sbjct: 300 LDTVKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFL 359 Query: 354 RNVPATIIPSVAVPLSLVGTFAVMYLAGFSINNLTLMALTIATGFVVDDAIVMIENISRY 413 +N AT+IP++AVP+ L+GTF V+ + GF+IN LT+ A+ +A G +VDDAIV++EN+ R Sbjct: 360 QNFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERV 419 Query: 414 I-EEGMKPMQAALKGAEQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLAVSIL 472 + EEG+ P QA K QI ++ + L AV +P+ F G ++ +F++T+ ++ Sbjct: 420 MSEEGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMT 479 Query: 473 ISAVVSLTLTPMMCARLLRHQPEEQQ-------GWFYHQSQAFFDRIIARYGVMLQWVLQ 525 +S +V+L LTP +CA LL+ + GWF Q FDR RY +++ +L Sbjct: 480 LSVLVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQ----FDRSNIRYQGIVRHMLG 535 Query: 526 RQKMTLLVAVATLGLTALLYVFVPKGFFPLQDTGVIQGISEASQSISFGAMGAKQQELAK 585 R + L L ++ +P GF P +D G + I + + GA A+ E+ + Sbjct: 536 RGWRYMAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQ----LPSGATKARTDEVIR 591 Query: 586 VVLEDPAVD---SLSSFIGVDG---TNATLNSGRMLINLKPHEERD---VSASDVIRRLQ 636 V + VD ++S V G + N G I LKP +ER +S +DV + Sbjct: 592 QVEQHFLVDQKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAG 651 Query: 637 PKLAQQVPGVTLYMQPVQDLTIEDSVSRTQYQFTLED-ADAG--TLSSWVPKLIARLQQV 693 A P + + + T + L+D A+ G L +L+ L Q Sbjct: 652 AAFANIRDARVFAFAPP---AVSELGNATGFDLMLKDEANLGHAALMQARNQLLGELMQD 708 Query: 694 PQLADVASNLQDQGLQAYIEIDRNAASRLGITTAAIDNALYNAFGQRLISTIYTQSNLYR 753 +L V N + + + +D + A LG+ + I++ + A+G ++ + + + Sbjct: 709 KRLVAVRPNGLEDTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKK 768 Query: 754 VVMEVKPEFQHGPQALDSIFLVTSAGGKVPLSSIATVTERTAPLVVNHIGQFPAATI-SF 812 V+++ +++ P +D ++ SAG VP S+ +T + + + P+ I Sbjct: 769 VMLQGDAQYRMLPSDVDRWYVRNSAGTMVPFSAFSTASWTSGSPRLERYNGVPSMEILGM 828 Query: 813 NLAKGASLGEAVKAIKAAEEEIGMPSSTVTNFQGAALAFQASLSNTLWLILAAIVTMYIV 872 L AS GEA+ ++AA + MP + G +L +AS T L +I+ +++ Sbjct: 829 ALPGAASSGEAMAIVEAALAK--MPPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLA 886 Query: 873 LGVLYESYIHPITILSTLPSAGVGALLSLMISGTDLGIIGIIGIILLIGIVKKNAIMMID 932 L LYES+ P +++ +P GALL M++ + +G++ IG+ KNAI++++ Sbjct: 887 LAALYESWAVPFSVILVVPLGVFGALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVE 946 Query: 933 FALEAERHQGKSPQEAIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLGITM 992 FA + H GKS EA +A +R RPILMT++A +LG LP++LG+G G+ + LG + Sbjct: 947 FAKDLYEH-GKSLVEATMEAVRMRLRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAV 1005 Query: 993 VGGLLVSQVLTLFTTPVIYLGFDSLGRRLRARFGRKASLPP 1033 +GG+L VL +F P+ ++ +L FGRK + P Sbjct: 1006 IGGMLSGTVLAVFFVPLFFVIIMTL-------FGRKPADAP 1039 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 412 bits (1060), Expect = e-116, Method: Compositional matrix adjust. Identities = 300/1027 (29%), Positives = 527/1027 (51%), Gaps = 31/1027 (3%) Query: 7 FILRPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMTSSVTAP 66 FI RPV +L + I+L G +A LP+S P + PTI V YPGA+ + SVT+ Sbjct: 5 FIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDSVTSL 64 Query: 67 LERQFGQMPGLKQMASTSSGGASV-ITLQFNLDLSLDVAEQEVQAAINAGSNLLPSDLPM 125 +E++ GL+ + S S V IT+ F+ + + D+A +VQ + LP+ + Sbjct: 65 IEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPAAVTQ 124 Query: 126 PPV-YSKVNPADTPIITLAVTSKTMPLPKVQDLIDTRLAQKISQLSGVGLVSLSGGQRPA 184 V +K I L+ T + + D + + +I ++ GVG L G +R A Sbjct: 125 QGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGTER-A 183 Query: 185 VRMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDG-PTR-----ASTIDANDQLRSA 238 +R+ ++P + L L DV AI N A G+ P+ A+T+ N QL S Sbjct: 184 MRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQLTSP 243 Query: 239 DEYRKLII-AYKNGAPIRVSDVADVIDGAENVRLGAWANQQPAVIVNIQRQPGANVIAVV 297 +++ +I+ A NGA +R+ DVA V G ++ + +P+ + +Q P AN + Sbjct: 244 EQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANALGTA 303 Query: 298 DSIKKILPQLQANLPGSIDVHILTDRTTTIRASVADVKFELLLSVALVVMVIFVFLRNVP 357 ++ K + +L P + I D + ++ S+ +V L+ ++ LV +V+F+FL+N+ Sbjct: 304 TAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQNIR 363 Query: 358 ATIIPSVAVPLSLVGTFAVMYLAGFSINNLTLMALTIATGFVVDDAIVMIENISRYI-EE 416 TIIP++ VP++L+GTFA + L GFSIN LT+ + +A G +VDDAIV++EN+ R + EE Sbjct: 364 YTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMSEE 423 Query: 417 GMKPMQAALKGAEQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLAVSILISAV 476 G+ P A K QI +I +T LIAV IP+ F G VG ++ +F++++ S++ S + Sbjct: 424 GLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVFSVL 483 Query: 477 VSLTLTPMMCARLLR-----HQPEEQQ--GWFYHQSQAFFDRIIARYGVMLQWVLQRQKM 529 ++ TLTP +CA +L+ H E++ GWF + F+ + Y ++ +L + Sbjct: 484 MAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRK----FNSTASGYQGIIGGMLNKAGR 539 Query: 530 TLLVAVATLGLTALLYVFVPKGFFPLQDTGVIQGISEASQSISFGAMGAKQQELAKVVLE 589 ++V V + LLYV +P F P +D G I + S A +++ + L+ Sbjct: 540 YMIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAVVKQIEEYYLK 599 Query: 590 DPAVDSLSSFIGVDGTNATLNSGRMLINLKPHEERDVSAS-DVIRRLQPKLAQQVPGVTL 648 DPAV+ + +G + N+ + LK +RD S S D I Q+ + Sbjct: 600 DPAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSQRDKSQSADAIAGKAFGAFSQIKDAIV 659 Query: 649 YMQPVQDLTIEDSVSRTQYQFTLEDADAGTLSSWVP---KLIARLQQVPQLADVASNLQD 705 + P+ I + + T + F L+D ++ V +++ Q LA V + Sbjct: 660 F--PLNPPPIPELGNATGFTFRLQDRAGLGHTALVQARNQILGMASQSKVLAGVRPEGLE 717 Query: 706 QGLQAYIEIDRNAASRLGITTAAIDNALYNAFGQRLISTIYTQSNLYRVVMEVKPEFQHG 765 Q ++IDR+ A+ LG+ + I++ L A G ++ RV+++ + + Sbjct: 718 DAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQRVIVQADAKRRLQ 777 Query: 766 PQALDSIFLVTSAGGKVPLSSIATVTERTAPLVVNHIGQFPAATISFNLAKGASLGEAVK 825 P+ L +++ S+G VP S+ T P+ + +PA I+ A G S GEA+ Sbjct: 778 PEDLTNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAMA 837 Query: 826 AIKAAEEEIGMPSSTVTNFQGAALAFQASLSNTLWLILAAIVTMYIVLGVLYESYIHPIT 885 +++ + +P + G +L + S + L +++ +++VL LYES P+ Sbjct: 838 EMESFVAK--LPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLA 895 Query: 886 ILSTLPSAGVGALLSLMISGTDLGIIGIIGIILLIGIVKKNAIMMIDFALEAERHQGKSP 945 ++ +P +GALL + + + +G+I ++G+ KNAI++I+FA + + QGK Sbjct: 896 VMLVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQ-AQGKGL 954 Query: 946 QEAIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLGITMVGGLLVSQVLTLF 1005 EA +A LRFRPI+MT++A +LG LPL + +G GS ++ +G ++GG++ + VL +F Sbjct: 955 IEATLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVF 1014 Query: 1006 TTPVIYL 1012 P+ ++ Sbjct: 1015 LVPIFFV 1021 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,801,323 Number of extensions: 108580 Number of successful extensions: 547 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 463 Number of HSP's successfully gapped: 11 Length of query: 1035 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 940 Effective length of database: 1,170,045 Effective search space: 1099842300 Effective search space used: 1099842300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 135 (56.6 bits)