BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1353.p
         (462 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310844|ref|YP_003774936.1| fumarate hydratase [Herbaspiril...   897   0.0  

>gi|300310844|ref|YP_003774936.1| fumarate hydratase [Herbaspirillum
           seropedicae SmR1]
          Length = 462

 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/462 (95%), Positives = 458/462 (99%)

Query: 1   MNHRMERDTFGLIEVPAERLWGAQTERSLHHFHISTERMPAELIVALAAVKRACAAVNRD 60
           MNHRMERDTFGLIEVPA+RLWGAQTERSLHHFHISTERMPAELIVALAAVKRACA+VNRD
Sbjct: 1   MNHRMERDTFGLIEVPADRLWGAQTERSLHHFHISTERMPAELIVALAAVKRACASVNRD 60

Query: 61  LGKLDGKKAEAIMAAADEVIAGKHPLEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGV 120
           LGKLDGKKAEAI+AAADEVIAGKHPLEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGV
Sbjct: 61  LGKLDGKKAEAIIAAADEVIAGKHPLEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGV 120

Query: 121 RGEDRLIHPNDDVNRGQSSNDIFPTAMHVAACMAVATHLIPSLHQLRATLADKSTRFADI 180
           RGEDRLIHPNDDVNRGQSSNDIFPTAMHVAACMAVATHLIP+LH LR TLA+KS++FADI
Sbjct: 121 RGEDRLIHPNDDVNRGQSSNDIFPTAMHVAACMAVATHLIPALHTLRGTLAEKSSQFADI 180

Query: 181 VKIGRTHLQDATPLTLGQEFSGYVAQLDHAESAIIATLNAISELAAGGTAVGTGLNAHPE 240
           VKIGRTHLQDATPLTLGQEFSGYVAQL+HAESA+I TLNAISELAAGGTAVGTGLNAHPE
Sbjct: 181 VKIGRTHLQDATPLTLGQEFSGYVAQLEHAESAVIGTLNAISELAAGGTAVGTGLNAHPE 240

Query: 241 FGERVAAELAKYFGFPFKTAPNKFAALAGHDALVSAHGGLKTLAAAMMKIANDVRWLASG 300
           FGERVAAELAK+FGFPFKTAPNKFAALAGHDALV++HGGLKTLAAA+MKIANDVRWLASG
Sbjct: 241 FGERVAAELAKFFGFPFKTAPNKFAALAGHDALVASHGGLKTLAAALMKIANDVRWLASG 300

Query: 301 PRSGLGEITIPENEPGSSIMPGKVNPTQCEAMTMLCAQVFGNDVALNIGGASGNFELNVF 360
           PRSGLGEITIPENEPGSSIMPGKVNPTQCEAMTMLCAQVFGNDVALNIGGASGNFELNVF
Sbjct: 301 PRSGLGEITIPENEPGSSIMPGKVNPTQCEAMTMLCAQVFGNDVALNIGGASGNFELNVF 360

Query: 361 KPVIIHNFLQSVRLLADGMASFEEHCARGIEANHSRIGELMEKSLMLVTALAPHIGYDKA 420
           KP+IIHNFLQSVRLLADGMASFEEHCARGIEANHSRIGELMEKSLMLVTALAPHIGYDKA
Sbjct: 361 KPLIIHNFLQSVRLLADGMASFEEHCARGIEANHSRIGELMEKSLMLVTALAPHIGYDKA 420

Query: 421 AKIAKQAHHDGTTLKQAALALGYVTEAQFAEWIKPEQMTRPG 462
           AKIAKQAHHDGTTLKQAAL+LGYVTE QFAEWIKPEQMTRPG
Sbjct: 421 AKIAKQAHHDGTTLKQAALSLGYVTEEQFAEWIKPEQMTRPG 462


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,383,573
Number of extensions: 53541
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 2
Length of query: 462
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 373
Effective length of database: 1,198,455
Effective search space: 447023715
Effective search space used: 447023715
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)