BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1351.p
         (319 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310842|ref|YP_003774934.1| cobalamin biosynthesis transmem...   598   e-172
gi|300311955|ref|YP_003776047.1| cobalamin biosynthesis CobD/Cbi...    83   2e-17

>gi|300310842|ref|YP_003774934.1| cobalamin biosynthesis
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 319

 Score =  598 bits (1541), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 305/319 (95%), Positives = 314/319 (98%)

Query: 1   MTFLSILFALLIEQLKPLRADNPVYASIKSFAATIEGWFNAGQVHHGRLGWVVMVGALTV 60
           MTFLSILFALLIEQLKPLRADNPVYASIKSFAATIEGWFNAGQVHHGRLGWV MVGALTV
Sbjct: 1   MTFLSILFALLIEQLKPLRADNPVYASIKSFAATIEGWFNAGQVHHGRLGWVAMVGALTV 60

Query: 61  PVALVYWVLLHVSLVAAFAWNVLVVYMTLGFRHYSHYFTSIQMALNSGDEMTARTLLAEW 120
           PVALVYW+LLHVSLVAAFAWNVLVVY+TLGFRHYSHYFTSIQ+ALNSGDEMTAR LLAEW
Sbjct: 61  PVALVYWLLLHVSLVAAFAWNVLVVYLTLGFRHYSHYFTSIQLALNSGDEMTARALLAEW 120

Query: 121 TKLDTAGMDVSEISRIASERALITTHRHVFGVFFWFLMPVGPALAVMYRVAEYLARAWNE 180
           T+ DT GMDVSEISRIASERALITTHRHVFGVFFWFLMPVGPALAVMYRVAEYL+RAWNE
Sbjct: 121 TRQDTTGMDVSEISRIASERALITTHRHVFGVFFWFLMPVGPALAVMYRVAEYLSRAWNE 180

Query: 181 PDHMKFEAFGRFAAQAFYWIDWIPARLTASAFAVVGNFEDAIYAWRNFASRWDDEAVGII 240
           PDHMKFEAFGRFAAQAFYWIDWIPARLTA+AFAVVGNFEDAIYAWRNFASRWDDE+ GII
Sbjct: 181 PDHMKFEAFGRFAAQAFYWIDWIPARLTAAAFAVVGNFEDAIYAWRNFASRWDDESAGII 240

Query: 241 LAAGGGAMGVRFGTEKQAAAGIILPADAATVDSMPEESDGLPGDTPSPRTLQSTVGLVWR 300
           LAAGGGAMGVRFGTEK+AAAGIILPADAATVDSMPEE+DGLPGDTPSPRTLQSTVGLVWR
Sbjct: 241 LAAGGGAMGVRFGTEKEAAAGIILPADAATVDSMPEETDGLPGDTPSPRTLQSTVGLVWR 300

Query: 301 ALLLWMFLLLLLSVAVWMG 319
           ALLLWMFLLLLLSVAVWMG
Sbjct: 301 ALLLWMFLLLLLSVAVWMG 319


>gi|300311955|ref|YP_003776047.1| cobalamin biosynthesis CobD/CbiB
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score = 83.2 bits (204), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 96/213 (45%), Gaps = 7/213 (3%)

Query: 31  FAATIEGWFN--AGQVHHGRLGWVVMVGALTVPVALVYWVLLHVSLVAAFAWNVLVVYMT 88
            A  IE   N   G    G L W +   A+  PV L  W++       A   +  ++Y  
Sbjct: 39  LAQRIEAALNRAPGLRLRGVLAWAL---AVLPPVLLAAWLIAQTPWWLAALLHAGLLYFC 95

Query: 89  LGFRHYSHYFTSIQMALNSGDEMTARTLLAEWTKLDTAGMDVSEISRIASERALITTHRH 148
           +G R    +   I  AL +G+   AR L A     DT      E+++   E  L   +  
Sbjct: 96  IGLRSLREHTLPIAQALGAGELAQARRLTAWIVSRDTRSASEQELAKAGVESLLENGNDA 155

Query: 149 VFGVFFWFLMPVGPALAVMYRVAEYLARAWNEPDHMKFEAFGRFAAQAFYWIDWIPARLT 208
           VFG  FWFL+  GP  A+++R++  L   W    + +F  FG  AA+    ++W PARLT
Sbjct: 156 VFGTLFWFLLAGGPG-ALLFRLSNTLDAMWGY-RNARFLYFGWAAARIDDALNWCPARLT 213

Query: 209 ASAFAVVGNFEDAIYAWRNFASRWDDEAVGIIL 241
           A ++AV+G    A+  W+  A  W     G ++
Sbjct: 214 ALSYAVLGQRRQALACWKEQAPAWSSPNAGPVM 246


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.137    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 930,176
Number of extensions: 34367
Number of successful extensions: 176
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 2
Length of query: 319
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,217,395
Effective search space: 284870430
Effective search space used: 284870430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)