BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1343.p
         (312 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310834|ref|YP_003774926.1| electron transfer flavoprotein ...   574   e-165
gi|300312146|ref|YP_003776238.1| electron transfer flavoprotein ...   139   4e-34

>gi|300310834|ref|YP_003774926.1| electron transfer flavoprotein
           subunit alpha [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score =  574 bits (1480), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 305/312 (97%), Positives = 306/312 (98%), Gaps = 3/312 (0%)

Query: 1   MTALAILVVAEHDNVSLKGSTLNTITAAVQAGGDVHVLVAGSNAKAAADAAAQVAGVAKV 60
           MTAL   V+AEHDN SLKGSTLNTITAA QAGGDVHVLVAGSNAKAAADAAAQVAGV KV
Sbjct: 1   MTAL---VIAEHDNASLKGSTLNTITAAAQAGGDVHVLVAGSNAKAAADAAAQVAGVTKV 57

Query: 61  LLADAPQFADGLAENVAEQVLAIAKDYSHILAPATAYGKNILPRVAAKLDVGQISDITKV 120
           LLADAPQFADGLAENVAEQVLAIAKDYSHILAPATAYGKNILPRVAAKLDVGQISDITKV
Sbjct: 58  LLADAPQFADGLAENVAEQVLAIAKDYSHILAPATAYGKNILPRVAAKLDVGQISDITKV 117

Query: 121 ESADTFERPIYAGNAIATVQSIDPIKVITVRTTGFDPAAQGGSAAVESIPAVADSGKSSF 180
           ESADTFERPIYAGNAIATVQSIDPIKVITVRTTGFDPAAQGGSAAVESIPAVADSGKSSF
Sbjct: 118 ESADTFERPIYAGNAIATVQSIDPIKVITVRTTGFDPAAQGGSAAVESIPAVADSGKSSF 177

Query: 181 VGREVAKSDRPELTAAKIIVSGGRGMGSAESFKILEPLADKLNAAMGASRAAVDAGYVPN 240
           VGREVAKSDRPELTAAKIIVSGGRGMGSAESFKILEPLADKLNAAMGASRAAVDAGYVPN
Sbjct: 178 VGREVAKSDRPELTAAKIIVSGGRGMGSAESFKILEPLADKLNAAMGASRAAVDAGYVPN 237

Query: 241 DWQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFSVADYGLVGDL 300
           DWQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFSVADYGLVGDL
Sbjct: 238 DWQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFSVADYGLVGDL 297

Query: 301 FEVVPELVKQLG 312
           FEVVPELVKQLG
Sbjct: 298 FEVVPELVKQLG 309


>gi|300312146|ref|YP_003776238.1| electron transfer flavoprotein
           subunit alpha [Herbaspirillum seropedicae SmR1]
          Length = 364

 Score =  139 bits (349), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/231 (38%), Positives = 130/231 (56%), Gaps = 11/231 (4%)

Query: 90  ILAPATAYGKNILPRVAAKLDVGQISDITKV-----ESADTFERPIYAGNAIATVQSID- 143
           +L  ATA G+++   VA  L  G  +D T +       +    RP + G+ + T+ +++ 
Sbjct: 121 LLLGATAQGRDLAGSVATTLKTGLTADCTGLTIDMENRSMAASRPTFGGSLLCTILTLNY 180

Query: 144 PIKVITVRTTGF---DPAAQGGSAAVESIPAVADSGKSSFVGREVA--KSDRPELTAAKI 198
             ++ TVR       +P        +E    + +S   + V   +   + D+P+L  A I
Sbjct: 181 RPQMATVRPRVMAMPEPDRSRSGQIIEHPLCLVESDIITKVLEYIPDNQQDKPQLPFADI 240

Query: 199 IVSGGRGMGSAESFKILEPLADKLNAAMGASRAAVDAGYVPNDWQVGQTGKIVAPQLYIA 258
           IV+GGRGM  AE+F+++  LA  L A +GA+R  V A +V  + QVGQ+GK V P+LYIA
Sbjct: 241 IVAGGRGMKRAENFQLIWDLAMVLGAEVGATRPVVQANWVQAERQVGQSGKTVRPKLYIA 300

Query: 259 VGISGAIQHLAGMKDSKVIVAINKDEEAPIFSVADYGLVGDLFEVVPELVK 309
            GISGAIQH  GM DS VI+AIN D  APIF  A YG+VG+   ++P L +
Sbjct: 301 AGISGAIQHRVGMADSDVIIAINSDPNAPIFDFASYGIVGNAMTILPALTE 351


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.130    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 897,242
Number of extensions: 36390
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,217,395
Effective search space: 276348665
Effective search space used: 276348665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)