BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1338.p (244 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 493 e-141 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 334 3e-93 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 312 2e-86 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 307 6e-85 gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPa... 295 2e-81 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 493 bits (1268), Expect = e-141, Method: Compositional matrix adjust. Identities = 238/244 (97%), Positives = 243/244 (99%) Query: 1 MPIVEINNITKRFGSNQVLNGISLSVERGQVVAVIGRSGSGKSTMLRCINGLETIDGGSI 60 MPIVEINNITKRFGSNQVLNGISLSVERGQVVA+IGRSGSGKSTMLRCINGLETIDGGSI Sbjct: 1 MPIVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSI 60 Query: 61 TVAGHKLTNKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARATAI 120 TVAGHKLT+KHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETAR TAI Sbjct: 61 TVAGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAI 120 Query: 121 KVLQQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKV 180 KVL+QVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKV Sbjct: 121 KVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKV 180 Query: 181 MEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEAKQFIGA 240 MEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEA+QFIGA Sbjct: 181 MEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIGA 240 Query: 241 GSIK 244 G+IK Sbjct: 241 GAIK 244 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 334 bits (857), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 159/239 (66%), Positives = 199/239 (83%), Gaps = 1/239 (0%) Query: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAVIGRSGSGKSTMLRCINGLETIDGGSITV 62 IV+I ++ K FGSN+VLNG+SL V++GQ+VA+IG+SGSGKST+LRC+NGLE +D G I V Sbjct: 4 IVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIQV 63 Query: 63 AGHKLTNKHE-HLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARATAIK 121 GH + + + +L ELRK VG+VFQ YNLFPHLTVE NI L+ +KK +TE A+ A K Sbjct: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTIAHK 123 Query: 122 VLQQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVM 181 VLQ VGL++K+DAYPEQLSGGQ QRVAIARSLAM P++MLFDEVTSALDPELTAEVLKVM Sbjct: 124 VLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVM 183 Query: 182 EELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEAKQFIGA 240 E+LARGGMTM+LVTHEM FAR++AD+ VFMHQG+VWE P +E F+ P+T E ++F+ + Sbjct: 184 EDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQKFVSS 242 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 312 bits (799), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 150/239 (62%), Positives = 184/239 (76%) Query: 1 MPIVEINNITKRFGSNQVLNGISLSVERGQVVAVIGRSGSGKSTMLRCINGLETIDGGSI 60 MP++ I+N+ KRFG N+VL GISL VE G+V+A+IG+SGSGKST+LRCINGLE+ID G+I Sbjct: 1 MPLIAIDNVKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNI 60 Query: 61 TVAGHKLTNKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARATAI 120 +VAG KL L LR VGM+FQ +NLFPHL+V N+M++P IVK + A TA Sbjct: 61 SVAGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAK 120 Query: 121 KVLQQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKV 180 L++VGL HK DAYP+QLSGGQQQRVAIAR+L+M PQ +L DE+TSALDPEL EVL V Sbjct: 121 ANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTV 180 Query: 181 MEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEAKQFIG 239 M LA+ GMT+L+VTHEM FAR V + VFMHQGKV E P EE F +P+TPE +QFIG Sbjct: 181 MRGLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIG 239 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 307 bits (786), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 153/239 (64%), Positives = 180/239 (75%), Gaps = 1/239 (0%) Query: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAVIGRSGSGKSTMLRCINGLETIDGGSITV 62 +VE+ + KRFGSN VL G+S V RG+VVA+IG+SGSGKST LRCIN LE ID G I+V Sbjct: 4 VVELQGVHKRFGSNTVLRGVSFQVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQISV 63 Query: 63 AGHKLTNKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARATAIKV 122 GH L L LR+DVG+VFQ YNLFPHLTV +NI L P VK+ + A+ A +V Sbjct: 64 CGHALHAAGLDLRGLRRDVGIVFQGYNLFPHLTVLQNITLGPTAVKRMPADQAQTLAQQV 123 Query: 123 LQQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVME 182 L +VGL K AYPEQLSGGQQQRVAIARSLA++PQ+MLFDEVTSALDPELT EVLKVME Sbjct: 124 LARVGLADKAGAYPEQLSGGQQQRVAIARSLALQPQLMLFDEVTSALDPELTGEVLKVME 183 Query: 183 ELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEAKQFIGAG 241 ++A GMTM+LVTHEM FARRVAD +FMHQG+VWE + E P TPE + F+G G Sbjct: 184 QMASEGMTMILVTHEMAFARRVADQVIFMHQGQVWE-QGGPEILDAPVTPELRSFVGTG 241 >gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 295 bits (756), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 150/238 (63%), Positives = 182/238 (76%), Gaps = 1/238 (0%) Query: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAVIGRSGSGKSTMLRCINGLETIDGGSITV 62 IV+++ + K FG NQVL G+S V RG+++A+IG SGSGKST LRCI+ LETID GSI V Sbjct: 26 IVKLDQVYKSFGDNQVLKGVSFEVARGEMIAIIGASGSGKSTALRCIDRLETIDSGSIEV 85 Query: 63 AGHKLTNKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARATAIKV 122 AG ++ + L +LR++VG+VFQ YNLFPHL V EN+ML+ R VK+ AR A+ Sbjct: 86 AGIRVDDPQVDLHKLRREVGIVFQSYNLFPHLNVLENVMLALRHVKQQDKAEARRVALAA 145 Query: 123 LQQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVME 182 L QVGLD K +AYPEQLSGGQQQRVAIARSLAM P+VMLFDEVTSALDP+LT EVL+VME Sbjct: 146 LAQVGLDEKANAYPEQLSGGQQQRVAIARSLAMAPKVMLFDEVTSALDPQLTGEVLRVME 205 Query: 183 ELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEAKQFIGA 240 +LA GMTMLLVTHEM FA+RVAD ++MHQG+VWE P E P TPE + F+ A Sbjct: 206 DLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVWEVGPG-EMLDHPYTPELQAFLAA 262 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 704,035 Number of extensions: 26069 Number of successful extensions: 539 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 291 Number of HSP's successfully gapped: 144 Length of query: 244 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 161 Effective length of database: 1,226,865 Effective search space: 197525265 Effective search space used: 197525265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)